View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_17 (Length: 263)
Name: NF9763_low_17
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 49974772 - 49975005
Alignment:
| Q |
13 |
gcaacacatatgaggttgagactatctcatctcagcttatagattataaaaccctaatgatagcaacgtatcgttggtgctataagtctaagttacgggg |
112 |
Q |
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| T |
49974772 |
gcaacacatatgaggttgagactatct-----cagcttatagattataaaaccctaatgatagcaacgtatcgttggtgctataagtctaagttacgggg |
49974866 |
T |
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| Q |
113 |
ttgtagacttttacatcaagatggaggtattaagctattgtggaccatacatcacatgttctcaaccttcccctcccaactctttttagcacaatcaata |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
49974867 |
ttgtagacttttacatcaagatggaggtattaagctattgtggaccatacatcacatgttctcgaccttcccctcccaactctttttagcacaatcaata |
49974966 |
T |
|
| Q |
213 |
actacacaaaatgtatacgtaccctatgccctgtgtctc |
251 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
49974967 |
actacacaaaatgtatacgtaccctatgccctgtgtctc |
49975005 |
T |
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