View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_19 (Length: 246)
Name: NF9763_low_19
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 32425540 - 32425755
Alignment:
| Q |
19 |
catagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcagcagtttcaccactaagcatgac |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425540 |
catagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcagcagtttcaccactaagcatgac |
32425639 |
T |
|
| Q |
119 |
acaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425640 |
acaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtg |
32425739 |
T |
|
| Q |
219 |
acaaccggctttcctt |
234 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
32425740 |
acaaccggctttcctt |
32425755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 234
Target Start/End: Original strand, 32419270 - 32419477
Alignment:
| Q |
27 |
atggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctg |
126 |
Q |
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||||| ||||||||||||||||| ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32419270 |
atggtgctctcagcttcaacacatattttagccattgtacgaacagcgagttctggataagctccagcagcagtttcaccactaagcatgacacagtctg |
32419369 |
T |
|
| Q |
127 |
tgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtgacaaccgg |
226 |
Q |
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| ||||||||||||||||| || |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||| || ||||| |
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| T |
32419370 |
ttccatccagaactgcatttgcaacatcagtagcttcagctctggttggccggggagatttgatcattgactccaacatctgggtcgcagtaacgaccgg |
32419469 |
T |
|
| Q |
227 |
ctttcctt |
234 |
Q |
| |
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||||||| |
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|
| T |
32419470 |
ttttcctt |
32419477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 172; Significance: 2e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 19 - 234
Target Start/End: Original strand, 40596246 - 40596461
Alignment:
| Q |
19 |
catagttgatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcagcagtttcaccactaagcatgac |
118 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
40596246 |
catagttaatggtactctcagcttcaacacaaattttagccatagttcgaacagcaagttctggataagctccagcagcagtttcaccgctaagcatgac |
40596345 |
T |
|
| Q |
119 |
acaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctctggttggcctaggtgatttgatcattgactccaacatctgcgttgcagtg |
218 |
Q |
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||| |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||| |
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| T |
40596346 |
acagtctgtgccgtccagaactgcattggcgacatctgtagcttcagctctggttggcctgggagatttgatcattgactccaacatctgggttgcagta |
40596445 |
T |
|
| Q |
219 |
acaaccggctttcctt |
234 |
Q |
| |
|
||||| |||||||||| |
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| T |
40596446 |
acaacaggctttcctt |
40596461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 69 - 193
Target Start/End: Complemental strand, 71092 - 70968
Alignment:
| Q |
69 |
acagcaagttctggataagctccagcagcagtttcaccactaagcatgacacaatctgtgccatccagaactgcattcgcgacatcagtagcttcagctc |
168 |
Q |
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|
||||||||||| || ||||||||||||||| ||||||||||||||||||| ||||| || ||||| ||||||||||| || |||||||| |||||||||| |
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| T |
71092 |
acagcaagttcagggtaagctccagcagcactttcaccactaagcatgacgcaatccgttccatcaagaactgcattggctacatcagttgcttcagctc |
70993 |
T |
|
| Q |
169 |
tggttggcctaggtgatttgatcat |
193 |
Q |
| |
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|||||||| || ||||||||||| |
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|
| T |
70992 |
gggttggccggggagatttgatcat |
70968 |
T |
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