View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9763_low_2 (Length: 448)
Name: NF9763_low_2
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_2 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Original strand, 33735636 - 33736050
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggagg |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33735636 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggagg |
33735735 |
T |
|
| Q |
116 |
aagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtgga |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33735736 |
aagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtgga |
33735835 |
T |
|
| Q |
216 |
tccagaagtggctgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgt |
315 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33735836 |
tccagaagtggttgtccctttggaggatataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgt |
33735935 |
T |
|
| Q |
316 |
gatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctgactcaagaacacggaacactttta |
415 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
33735936 |
gatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctgactcaagaacatggaacactttta |
33736035 |
T |
|
| Q |
416 |
gttcttgaattcaat |
430 |
Q |
| |
|
||||||||||||||| |
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|
| T |
33736036 |
gttcttgaattcaat |
33736050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 16 - 391
Target Start/End: Original strand, 33718963 - 33719341
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggagg |
115 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||||| |
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|
| T |
33718963 |
agaggagtgagacagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgctgttcgtgtttggctcggaacctttaccacggcggagg |
33719062 |
T |
|
| Q |
116 |
aagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaagaacgtggtgga |
215 |
Q |
| |
|
|||||||||||||||| |||||||| || || ||||| |||||||| ||||| ||||||||||||||| | ||||||||||| |||||| | || | ||| |
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|
| T |
33719063 |
aagctgccagagcttatgacaatgccgccatcgagtttcgtgggccgagggcaaagctcaattttccacttgttgatgaatcccttaagcatgttgagga |
33719162 |
T |
|
| Q |
216 |
tccagaagtggctgtccctttggaggat---ataaaggacgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaat |
312 |
Q |
| |
|
||||||||| || | || || || | |||||| |||||||||||||||||||| |||||||| |||| | ||| ||||||| ||||||| || |
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|
| T |
33719163 |
accagaagtgatcgttcattctaagcatgtaacaaaggatgagaatatgaatcaagaaatgcaaattgaaacaatgacggggtttgagaataataaggat |
33719262 |
T |
|
| Q |
313 |
tgtgatttttgggatagtatcggagaagctgattttcaacaactaatgaggtttatggattttgatagagattcttctg |
391 |
Q |
| |
|
|||||||||| |||||| || || ||| |||||||||||||| | |||| ||||||||| ||| | |||||||||||| |
|
|
| T |
33719263 |
tgtgattttttggatagcattggtgaacctgattttcaacaatttatgaagtttatggaattttctggagattcttctg |
33719341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 33720982 - 33721170
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggagg |
115 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
33720982 |
agaggagtgaggcagagaccatggggaaaatgggctgctgagattcgtgacccgagacgtgcggttcgtgtttggcttggaacctttaccacggcggagg |
33721081 |
T |
|
| Q |
116 |
aagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
204 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| ||||| || |||||||| ||||||||| | ||||||||||| |||||| |
|
|
| T |
33721082 |
aagctgctagagcttacgacaatgccgctatcgagttccgcgggccgagagccaagcttaattttccacttgttgatgaatctcttaag |
33721170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 33750436 - 33750624
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggagg |
115 |
Q |
| |
|
||||||||||| || || |||||||| |||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
33750436 |
agaggagtgagacaaagaccatggggtaaatgggctgctgaaattcgtgacccgagacgtgccacccgtgtttggctcggaacattttccacggcggagg |
33750535 |
T |
|
| Q |
116 |
aagctgccagagcttacgacaatgctgctattgagttccgtgggccaagggccaagctcaattttccagtcgttgatgaatcgcttaag |
204 |
Q |
| |
|
|||||||||||||||| ||||||||||| || |||||||||||||| |||||||| |||||||||||| | |||||||| || |||||| |
|
|
| T |
33750536 |
aagctgccagagcttatgacaatgctgccatcgagttccgtgggccgagggccaaactcaattttccaatggttgatgattcacttaag |
33750624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 251 - 415
Target Start/End: Original strand, 33750683 - 33750847
Alignment:
| Q |
251 |
acgagaatatgaatcaagaaatacaaattgagacaactatgggatttgagagtaataagaattgtgatttttgggatagtatcggagaagctgattttca |
350 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| ||| ||||||| || ||||| | ||||||||||||||||||| | || ||| |||||||||| |
|
|
| T |
33750683 |
acgagaatatgaatcaagaaatgcaaagtgagacaaatattggatttgggaataatatggattgtgatttttgggataggcttggggaaactgattttca |
33750782 |
T |
|
| Q |
351 |
acaactaatgaggtttatggattttgatagagattcttctgactcaagaacacggaacactttta |
415 |
Q |
| |
|
|||||| ||||||||||||||||||| | ||||||||||||| || ||||| |||||||||||| |
|
|
| T |
33750783 |
acaactgatgaggtttatggattttggtggagattcttctgattccagaactgggaacactttta |
33750847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 266 - 373
Target Start/End: Original strand, 33721214 - 33721327
Alignment:
| Q |
266 |
aagaaatacaaattgagacaactatgggatttgagagtaataagaat---tgtgatttttgggatagtatcgg---agaagctgattttcaacaactaat |
359 |
Q |
| |
|
||||||| |||||||||||||| |||||||||| || ||||| || | |||||||||||||||||||| || ||||||||||||||||||||| || |
|
|
| T |
33721214 |
aagaaatgcaaattgagacaacgatgggatttgggaataatacgactgaatgtgatttttgggatagtattggggaagaagctgattttcaacaacttat |
33721313 |
T |
|
| Q |
360 |
gaggtttatggatt |
373 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
33721314 |
gaggtttatggatt |
33721327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 45014048 - 45013999
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtga |
65 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
45014048 |
agaggtgtgaggcagaggccatggggaaagtgggctgcagagattcgtga |
45013999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 6568891 - 6568943
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccc |
68 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
6568891 |
agaggagtgagacagagaccatggggaaaatgggcagctgaaatacgtgaccc |
6568943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 6583050 - 6583102
Alignment:
| Q |
16 |
agaggagtgaggcagaggccatggggaaaatgggctgctgagattcgtgaccc |
68 |
Q |
| |
|
||||||||||| || || ||||||||||||||||| ||||| || |||||||| |
|
|
| T |
6583050 |
agaggagtgagacaaagaccatggggaaaatgggcagctgaaatacgtgaccc |
6583102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 63
Target Start/End: Complemental strand, 50102309 - 50102277
Alignment:
| Q |
31 |
aggccatggggaaaatgggctgctgagattcgt |
63 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
50102309 |
aggccatggggaaaatgggctgctgagattcgt |
50102277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 63
Target Start/End: Original strand, 47424881 - 47424914
Alignment:
| Q |
30 |
gaggccatggggaaaatgggctgctgagattcgt |
63 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| |
|
|
| T |
47424881 |
gaggccatggggaagatgggctgctgagattcgt |
47424914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 65
Target Start/End: Original strand, 8584915 - 8584950
Alignment:
| Q |
30 |
gaggccatggggaaaatgggctgctgagattcgtga |
65 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |
|
|
| T |
8584915 |
gaggccatggggcaaatgggctgctgagattcgtga |
8584950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 2361356 - 2361316
Alignment:
| Q |
19 |
ggagtgaggcagaggccatggggaaaatgggctgctgagat |
59 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| || ||||| |
|
|
| T |
2361356 |
ggagtgaggcagagaccatggggaaaatgggcggcggagat |
2361316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 134
Target Start/End: Original strand, 45437332 - 45437432
Alignment:
| Q |
34 |
ccatggggaaaatgggctgctgagattcgtgaccctagacgtgcggtccgtgtttggcttggaacctttaccacggcggaggaagctgccagagcttacg |
133 |
Q |
| |
|
||||||||||||||||| |||||||| |||||||| ||| | || ||||||||||| ||||| || | ||| || || |||||||| ||||| |||| |
|
|
| T |
45437332 |
ccatggggaaaatgggcagctgagatccgtgacccgagaaaaggagttcgtgtttggctcggaactttcaacactgctgaagaagctgcaagagcctacg |
45437431 |
T |
|
| Q |
134 |
a |
134 |
Q |
| |
|
| |
|
|
| T |
45437432 |
a |
45437432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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