View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_22 (Length: 239)
Name: NF9763_low_22
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 32119251 - 32119463
Alignment:
| Q |
1 |
tgttttctgtatccattgcactttcactttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggtaaaaaagacaagcgacaaattattcca |
100 |
Q |
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| T |
32119251 |
tgttttctgtatccattgcact------ttggtaagtagaaccttgcaagacaacaaagaggaagaaagcggtaaaaaagacaagcgacaaattattcca |
32119344 |
T |
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| Q |
101 |
aagttataattattgaaaataactgacaagaaacggaaagaacggaactatgacatagtctattaaagatccgtccacttggagtagaattgaaaaatta |
200 |
Q |
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| T |
32119345 |
aagttataattattgaaaataactgacaagaaacggaaagaacggaactatgacatactctattaaagatctgtccacttggagtagaattgaaaaatta |
32119444 |
T |
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| Q |
201 |
tacgggggcacgaaagatg |
219 |
Q |
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| T |
32119445 |
tacgggggcgcgaaagatg |
32119463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 14375015 - 14374946
Alignment:
| Q |
149 |
tatgacatagtctattaaagatccgtccacttggagtagaattgaaaaattatacgggggcacgaaagat |
218 |
Q |
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| T |
14375015 |
tatgacatactctattaaggatccgtccacttggagtagaatcgaaaaatgacatgggggcgcgaaagat |
14374946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 27 - 112
Target Start/End: Complemental strand, 14375120 - 14375032
Alignment:
| Q |
27 |
ctttggtaagtagaaagttgcaagacatcaaagaggaagaaagcggt---aaaaaagacaagcgacaaattattccaaagttataatta |
112 |
Q |
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| T |
14375120 |
ctttggtcagtagaagcctgcaagacaacaaagaggaagaaagcgataaaaaaaaaaacaagcaacaaagtattccaaagttataatta |
14375032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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