View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_23 (Length: 239)
Name: NF9763_low_23
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_23 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 15 - 220
Target Start/End: Original strand, 32596702 - 32596907
Alignment:
| Q |
15 |
tggacatcacacaaacaaatgagatcaaggaaaccatactaacaacagaaaaatagctcaggtgtaagggatttcaaactttgagttggctgaaagaaaa |
114 |
Q |
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| T |
32596702 |
tggacatcacacaaacaaatgagatcaaggaaaccatactaacaacagaaaaatagctcaggtgtaagggatttcaaactttgagttggctgaaagaaaa |
32596801 |
T |
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| Q |
115 |
taaggcaacctaaccaaaccattgaacaagaagttgcaataagatcaagagaatttccacatatggcttctctattaaacaaaaatttctaaccacatat |
214 |
Q |
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| T |
32596802 |
taaggcgacctaaccaaaccattggacaagaagttgcaataagatcaagagaatttccacatatggcttctctattaaacaaaaatttctaaccacatat |
32596901 |
T |
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| Q |
215 |
gcttat |
220 |
Q |
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|||||| |
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| T |
32596902 |
gcttat |
32596907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 32601292 - 32601490
Alignment:
| Q |
18 |
acatcacacaaacaaatgagatcaaggaaaccatactaacaacagaaaaatagctcaggtgtaagggatttcaaactttgagttggctgaaagaaaataa |
117 |
Q |
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|||||||| |||||||| |||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||| |||||| ||||||||||||| |
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| T |
32601292 |
acatcacataaacaaattagatcaaggaaaccttactaacagcagaaaaatagcttaggtgtaggggatttcaaactttcagttggatgaaagaaaataa |
32601391 |
T |
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| Q |
118 |
ggcaacctaaccaaaccattgaacaagaagttgcaataagatcaagagaatttccacatatggcttctctattaaacaaaaatttctaaccacatatgc |
216 |
Q |
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|||||||| ||||| |||||| ||||||| | | ||||| ||||| ||||||||| ||||| ||||||| |||||||||| ||||||||||||||||| |
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| T |
32601392 |
ggcaacctcaccaacccattggacaagaacctaccataaggtcaagtgaatttccatatatgacttctctgttaaacaaaattttctaaccacatatgc |
32601490 |
T |
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