View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_4 (Length: 406)
Name: NF9763_low_4
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 387
Target Start/End: Original strand, 26494934 - 26495320
Alignment:
| Q |
1 |
ttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgtt |
100 |
Q |
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| T |
26494934 |
ttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgtt |
26495033 |
T |
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| Q |
101 |
gatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactagattcaacaattggagacattttata |
200 |
Q |
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| T |
26495034 |
gatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattagattcaacaattggagacattttata |
26495133 |
T |
|
| Q |
201 |
ggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagatataaatgatacattgat |
300 |
Q |
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| T |
26495134 |
ggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacacatttagatataaatgacacattgat |
26495233 |
T |
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| Q |
301 |
gccatagagcaatgatacaaatatagcaatgtaaggttagtttacaacatcaatcaactatggtgtaaatatatgtgtatatctgtg |
387 |
Q |
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| T |
26495234 |
gccatagagcaatgatacaaatatagcaatgtatggttagtttacaacatcaatcaaccatggtgtaaatatatgtgtgtgtctgtg |
26495320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 26506961 - 26507105
Alignment:
| Q |
1 |
ttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgtt |
100 |
Q |
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||||||||||||||| ||||||||||||||| |||| |||||||| | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||| |
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| T |
26506961 |
ttgtcctgcctataacttggcaatgctccatgtagagtactttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgtt |
26507060 |
T |
|
| Q |
101 |
gatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
145 |
Q |
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|||||| |||||||||| |||||||| |||||||||||||||||| |
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| T |
26507061 |
gatttgtcagaaaaacaggaatttactatggtgatgaaatatcca |
26507105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
| Q |
96 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
145 |
Q |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2294246 |
atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca |
2294295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
| Q |
96 |
atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca |
145 |
Q |
| |
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||||||||||||| |||| ||||||||| || |||||||||||| ||||| |
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| T |
2310577 |
atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca |
2310626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 2303790 - 2303842
Alignment:
| Q |
24 |
tgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag |
76 |
Q |
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| T |
2303790 |
tgctccatttagaatattttgtggctaatttggtttggaatttcgattggaag |
2303842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 15176327 - 15176287
Alignment:
| Q |
35 |
gaatactttgttgctaatttggttttgaactttgagtggaa |
75 |
Q |
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| T |
15176327 |
gaatactttgttgccaattttgttttgaattttgagtggaa |
15176287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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