View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_5 (Length: 398)
Name: NF9763_low_5
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 1 - 389
Target Start/End: Complemental strand, 51454568 - 51454180
Alignment:
| Q |
1 |
tctttttctttctgccgcatttcattatcgccgccgcatctttagcggagaatgaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
51454568 |
tctttttctttctgccgcatttcattatcgccgccgcagctttagcggagaatgaatccctagctgcaatgtcatcaccttcaaccgaaccttcatcgtc |
51454469 |
T |
|
| Q |
101 |
cttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454468 |
cttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgcttccaccacgtcatcacgttca |
51454369 |
T |
|
| Q |
201 |
tcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51454368 |
tcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtcaccatcctccaacggtaccgtttccgcgccaacattggcagtaggtt |
51454269 |
T |
|
| Q |
301 |
gtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtgtctgtg |
389 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
51454268 |
gtgtttcttgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatataagtgactgtg |
51454180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 54 - 379
Target Start/End: Complemental strand, 51478697 - 51478372
Alignment:
| Q |
54 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
153 |
Q |
| |
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|||||| ||||||| ||| | || ||||||| ||||| ||||||||| || ||| | ||||||||||||||| ||||||| |||| |||||||| ||| |
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| T |
51478697 |
gaatccttagctgccatgctatcagcttcaacagaaccatcatcgtccgtcgacaacaacaccaccgttttgggtccaacatccatgtcttgttttcctc |
51478598 |
T |
|
| Q |
154 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc |
253 |
Q |
| |
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||||||||| ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| || |
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| T |
51478597 |
gatcaggaacagattcttcagctacttccaccacgtcatcacgttcatcgtccttcaacgacgccgtttcagctccaacaccgatagcttgtgccacatc |
51478498 |
T |
|
| Q |
254 |
accatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgatgatcatgatcaggaatgggttcatctgaatcagggagggtg |
353 |
Q |
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||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||| |||| |
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| T |
51478497 |
accatcctccaacggtaccatttccgcgccaacattggcagtgggttgtgtttctcgatgatcatgatcaggaatgggttcatctgggtccgggacggtg |
51478398 |
T |
|
| Q |
354 |
agtgtgactttgattttcactatata |
379 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
51478397 |
agtatgactttgattttcactatata |
51478372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 69 - 225
Target Start/End: Complemental strand, 51474482 - 51474326
Alignment:
| Q |
69 |
atgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagatt |
168 |
Q |
| |
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|||||| || ||||||| ||||||||||||||| ||| | ||||||| | |||||||||||||| ||| | |||||||||||||||||||| | ||| |
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| T |
51474482 |
atgtcatcagcttcaacggaaccttcatcgtccgatgacaacaacaccactgctttggcgccaacatccatagtttgtttttctcgatcaggaacatatt |
51474383 |
T |
|
| Q |
169 |
cttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcag |
225 |
Q |
| |
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||||||||||| | |||| ||||||| |||| | || ||||||||| | ||||||| |
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| T |
51474382 |
cttcagctgctgctgccacatcatcaccttcaccgtcattcaacgacactgtttcag |
51474326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 77; Significance: 1e-35; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 54 - 274
Target Start/End: Complemental strand, 18079091 - 18078871
Alignment:
| Q |
54 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
153 |
Q |
| |
|
|||||| ||||||| |||||| || ||||||| ||||||||||||||| || ||| | || |||| |||||||||||| | ||| ||||||||||||| |
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| T |
18079091 |
gaatccttagctgccatgtcatcagcttcaacagaaccttcatcgtccgtcgacaacagcaacaccattttggcgccaaagtccatagcttgtttttctc |
18078992 |
T |
|
| Q |
154 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc |
253 |
Q |
| |
|
|||||||| | |||||||| ||||| | ||||||| |||| |||| | || |||||||| ||| ||| ||| |||||||||| |||| |||||||||| |
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| T |
18078991 |
gatcaggagcaaattcttcaactgctgctgccacgtcgtcaccttcagcgtcgttcaacgaagccattttagcgccaacaccgatagctggtgccacgtc |
18078892 |
T |
|
| Q |
254 |
accatcctccaacggtaccgt |
274 |
Q |
| |
|
| || |||||||||||||||| |
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| T |
18078891 |
atcaccctccaacggtaccgt |
18078871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 54 - 312
Target Start/End: Complemental strand, 18077186 - 18076928
Alignment:
| Q |
54 |
gaatccctagctgcaatgtcaccaccttcaaccgaaccttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctc |
153 |
Q |
| |
|
|||||| ||||| | |||||| || ||||||| |||||||||||||| | ||| | |||||| || ||||||||||||| ||| | ||||||||||| |
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| T |
18077186 |
gaatccttagcttccatgtcatcagcttcaacggaaccttcatcgtctgacgacaacaccaccactgtattggcgccaacatccatagtttgtttttctc |
18077087 |
T |
|
| Q |
154 |
gatcaggaatagattcttcagctgcttccaccacgtcatcacgttcatcatccttcaacgacgccgtttcagctccaacaccgacagcttgtgccacgtc |
253 |
Q |
| |
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|| |||||| |||||| |||||||| || |||| ||||||| |||| | || ||||||||||| | ||||| | |||| ||| ||| ||||||| ||| |
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| T |
18077086 |
gaccaggaacagattcaacagctgctgccgccacatcatcaccttcaccgtcgttcaacgacgctgattcagaactaacatcgatagcatgtgccaagtc |
18076987 |
T |
|
| Q |
254 |
accatcctccaacggtaccgtttccgcgccaacattggcagtaggttgtgtttctcgat |
312 |
Q |
| |
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| | |||| |||||||||||| ||||||||||| |||||| ||||||||||||| |
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| T |
18076986 |
atctccctctgacggtaccgtttgggcgccaacattcaaagtaggctgtgtttctcgat |
18076928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 308 - 383
Target Start/End: Complemental strand, 18078865 - 18078790
Alignment:
| Q |
308 |
tcgatgatcatgatcaggaatgggttcatctgaatcagggagggtgagtgtgactttgattttcactatatatgtg |
383 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || |||| |||||| ||||||||||||| ||| |||||||| |
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|
| T |
18078865 |
tcgatgatcatgatcaggaatgggttcgtctaggtccgggactgtgagtctgactttgatttttactgtatatgtg |
18078790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 351 - 383
Target Start/End: Complemental strand, 18076907 - 18076875
Alignment:
| Q |
351 |
gtgagtgtgactttgattttcactatatatgtg |
383 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
18076907 |
gtgagtgtgactttgattttcactatatatgtg |
18076875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 43159896 - 43159816
Alignment:
| Q |
92 |
ttcatcgtccttcaacagcgacaccaccgttttggcgccaacattcatggcttgtttttctcgatcaggaatagattcttc |
172 |
Q |
| |
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|||||||||| |||||||| || ||||||| ||||||||||||||||| |||||||||||| ||||||||| ||||||||| |
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| T |
43159896 |
ttcatcgtccgtcaacagcaactccaccgtattggcgccaacattcatagcttgtttttcttgatcaggaacagattcttc |
43159816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 179
Target Start/End: Complemental strand, 43159745 - 43159692
Alignment:
| Q |
126 |
gcgccaacattcatggcttgtttttctcgatcaggaatagattcttcagctgct |
179 |
Q |
| |
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|||||||||||||| |||||||| ||| ||||||||| ||| ||||| |||||| |
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|
| T |
43159745 |
gcgccaacattcatagcttgtttatcttgatcaggaacagactcttctgctgct |
43159692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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