View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9763_low_7 (Length: 357)
Name: NF9763_low_7
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_7 |
 | |
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| [»] scaffold0106 (1 HSPs) |
| | |
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| [»] scaffold0437 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 354
Target Start/End: Original strand, 20850954 - 20851307
Alignment:
| Q |
1 |
ttttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
20850954 |
ttttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatctttgttggggattttaatgcggttctaggggctca |
20851053 |
T |
|
| Q |
101 |
tgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtg |
200 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
20851054 |
tgagaagaggggtcgacgtctgcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctgaatacaaacggtgta |
20851153 |
T |
|
| Q |
201 |
caatatacttggaacaacggccgcttagatacagattcagnnnnnnngcgtctcgatcgtgccatttgtaatgaagcttggctggattgttggggtggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
20851154 |
caatatacttggaacaacggccgcttagatacagattcagtttttttgcgtctcgaccgtgccatttgtaatgaagcttggctggattgttggggtggca |
20851253 |
T |
|
| Q |
301 |
cttcctgtacggccctactgagaacacaatctgaccaccaccctttgcttctcc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20851254 |
cttcctgtacggccctactgagaacacaatctgaccaccaccctttgctgctcc |
20851307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 26694131 - 26694343
Alignment:
| Q |
18 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
117 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
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|
| T |
26694131 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
26694230 |
T |
|
| Q |
118 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
217 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
|
|
| T |
26694231 |
gtctccctccctctatttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
26694330 |
T |
|
| Q |
218 |
cggccgcttagat |
230 |
Q |
| |
|
||| | |||||| |
|
|
| T |
26694331 |
tggcaggttagat |
26694343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 230
Target Start/End: Original strand, 26963863 - 26964075
Alignment:
| Q |
18 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
117 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
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|
| T |
26963863 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
26963962 |
T |
|
| Q |
118 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
217 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
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|
| T |
26963963 |
gtctccctccctctatttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
26964062 |
T |
|
| Q |
218 |
cggccgcttagat |
230 |
Q |
| |
|
||| | |||||| |
|
|
| T |
26964063 |
tggcaggttagat |
26964075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Complemental strand, 21735829 - 21735797
Alignment:
| Q |
56 |
tccttggatatttgttggggattttaatgcggt |
88 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
21735829 |
tccttggttatttgttggggattttaatgcggt |
21735797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 22025237 - 22024884
Alignment:
| Q |
1 |
ttttacgcagacaattatgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
22025237 |
ttttacacagacaattatgggctgatctaactatgttgcaaaataattttatagctcattggatctttgttggggattttaatgcggttctaggggctca |
22025138 |
T |
|
| Q |
101 |
tgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtg |
200 |
Q |
| |
|
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
|
|
| T |
22025137 |
tgagaagaggggtcgacgtctgcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctgaatacaaaaggtgta |
22025038 |
T |
|
| Q |
201 |
caatatacttggaacaacggccgcttagatacagattcagnnnnnnngcgtctcgatcgtgccatttgtaatgaagcttggctggattgttggggtggta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22025037 |
caatatacttggaacaacggccgcttagatacagattcagtttttttgcgtctcgaccgtgccatttgtaatgaagcttggctggattgttggggtggta |
22024938 |
T |
|
| Q |
301 |
cttcctgtacggccctactgagaacacaatctgaccaccaccctttgcttctcc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
22024937 |
cttcctgtacggccctactgagaacacaatctgaccaccaccctttgctgctcc |
22024884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 106
Target Start/End: Complemental strand, 32135068 - 32134992
Alignment:
| Q |
30 |
actatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaa |
106 |
Q |
| |
|
|||||| | |||||||||||| | ||||| ||||| ||||| ||||||| | ||| ||| |||||||||||||||| |
|
|
| T |
32135068 |
actatgcttcaaaataattttgtggctccatggatctttgtgcgggatttcattgccgttttaggggctcatgagaa |
32134992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 22835256 - 22835044
Alignment:
| Q |
18 |
tgggctgatctaactatgttgcaaaataattttatagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagaggggcagac |
117 |
Q |
| |
|
|||||||||||||| ||| | || ||||||| | ||||| ||||| ||||| |||||||||||||| || | || ||||||||||| ||||| | | |
|
|
| T |
22835256 |
tgggctgatctaacaatgctccagaataattacgtcgctccgtggatttttgtgggggattttaatgccgtcttgggtgctcatgagaaaaggggacgtc |
22835157 |
T |
|
| Q |
118 |
gtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatctgttacttcatctcaatacaagtggtgtgcaatatacttggaacaa |
217 |
Q |
| |
|
|||| |||| ||| | ||||||| || |||||| ||||||| ||||||||| | ||| | ||||| ||||||| ||| || |||| |||||||||||| |
|
|
| T |
22835156 |
gtctccctccctctctttcttgtacggattttcttgcttggtccaatgccaatttattattacatctgaatacaaatggggtacaatttacttggaacaa |
22835057 |
T |
|
| Q |
218 |
cggccgcttagat |
230 |
Q |
| |
|
||| | |||||| |
|
|
| T |
22835056 |
tggcaggttagat |
22835044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0106 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0106
Description:
Target: scaffold0106; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 214
Target Start/End: Original strand, 23277 - 23419
Alignment:
| Q |
72 |
ggggattttaatgcggttctaggggctcatgagaagaggggcagacgtcttcctcaatctttatcttgtaatgactttctttcttggtctaatgccaatc |
171 |
Q |
| |
|
||||||||||||||||| |||| |||||||| || || || | |||||||||| ||| | ||||| | ||||||||| ||||||||||||| |||| |
|
|
| T |
23277 |
ggggattttaatgcggtgttaggtgctcatgaaaaaagaggtcgccgtcttcctccttctatttcttgcaccgactttcttacttggtctaatgctaatc |
23376 |
T |
|
| Q |
172 |
tgttacttcatctcaatacaagtggtgtgcaatatacttggaa |
214 |
Q |
| |
|
| || | ||| | ||||||| ||| ||||||| ||||||||| |
|
|
| T |
23377 |
tcttgcggcatttgaatacaaatggggtgcaatttacttggaa |
23419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0437 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0437
Description:
Target: scaffold0437; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 7908 - 7940
Alignment:
| Q |
56 |
tccttggatatttgttggggattttaatgcggt |
88 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
7908 |
tccttggttatttgttggggattttaatgcggt |
7940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 13220368 - 13220428
Alignment:
| Q |
52 |
tagctccttggatatttgttggggattttaatgcggttctaggggctcatgagaagagggg |
112 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||||| || |||| |||||||||||| |||| |
|
|
| T |
13220368 |
tagcaccttggatttttgtgggggactttaatgcgattttaggtgctcatgagaagtgggg |
13220428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 281
Target Start/End: Complemental strand, 12686114 - 12686082
Alignment:
| Q |
249 |
cgtctcgatcgtgccatttgtaatgaagcttgg |
281 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| |
|
|
| T |
12686114 |
cgtctcgatcgtgctatttgtaatgaagcttgg |
12686082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 21491759 - 21491715
Alignment:
| Q |
56 |
tccttggatatttgttggggattttaatgcggttctaggggctca |
100 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| || |||||||| |
|
|
| T |
21491759 |
tccttggttgtttgttggggattttaatgcggtgctcggggctca |
21491715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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