View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9763_low_9 (Length: 348)
Name: NF9763_low_9
Description: NF9763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9763_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 12 - 333
Target Start/End: Complemental strand, 4654977 - 4654655
Alignment:
| Q |
12 |
gaacctgtgcatcaacatttaaaatatgtgaacttcagccacttacgttacttnnnnnnnnnnntgtttagtttgataaaattataatttttctttttag |
111 |
Q |
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| T |
4654977 |
gaacctgtacatcaacatttaaaa-atgtgaacttcagccacc-atgttacttacaaaaaaaaatgtttagtttgataaaattataatttttctttt-ag |
4654881 |
T |
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| Q |
112 |
tcatagnnnnnnnnaaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtnnnnnnnnntgaagtgcattagtattattatttccttc |
211 |
Q |
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| T |
4654880 |
tcatagtttttct-aaatatgtgtgaactgtgaaataaataaatatgtcactccaatattgtaaaaaaaaatgaagtgcattagtattattatttccttc |
4654782 |
T |
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| Q |
212 |
ctatggttttcaattgataaaaagaaatgagtgttttcctatccacaatt-----atcctaattgctccccaaggaaatcatttgaccatttcaatcatc |
306 |
Q |
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| T |
4654781 |
ctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattatgtgatcctaattgctccccaaggaaatcatttgaccatttcaatgatc |
4654682 |
T |
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| Q |
307 |
agtctcaagtgctgttttatggaaatt |
333 |
Q |
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| T |
4654681 |
agtctcaagtgctgttttatggaaatt |
4654655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 333
Target Start/End: Complemental strand, 4644987 - 4644860
Alignment:
| Q |
213 |
tatggttttcaattgataaaa-agaaatgagtgttttcctatc--cacaatta-----tcctaattgctccccaaggaaatcatttgaccatttcaatca |
304 |
Q |
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| T |
4644987 |
tatggttttgaatt-ataaaacagaaatgagagttttcctatctccacaattacgtgatcctaattgcttcccaaggagatcatttgaccatttcaatga |
4644889 |
T |
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| Q |
305 |
tcagtctcaagtgctgttttatggaaatt |
333 |
Q |
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| T |
4644888 |
tcagtctcaagtgttgttttatggaaatt |
4644860 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 183 - 263
Target Start/End: Complemental strand, 4674601 - 4674521
Alignment:
| Q |
183 |
tgaagtgcattagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat |
263 |
Q |
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| T |
4674601 |
tgaagtgcattagtatttttatttccttcgtatgattttcagttagtaaaaagaaatgagtgttttcctatccacaattat |
4674521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 202 - 302
Target Start/End: Complemental strand, 4674033 - 4673929
Alignment:
| Q |
202 |
tatttccttcctatggttttcaattgataaaa-agaaatgagtgttttcctatccacaattat-----cctaattgctccccaaggaaatcatttgacca |
295 |
Q |
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| T |
4674033 |
tatttctttcgtatggtttttaatt-ataaaacagaaatgaaagttt-cctatccacaattatgtgatcctaatttcttcctaaggaaatcatttgacca |
4673936 |
T |
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| Q |
296 |
tttcaat |
302 |
Q |
| |
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||||||| |
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| T |
4673935 |
tttcaat |
4673929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 4795127 - 4795057
Alignment:
| Q |
191 |
attagtattattatttccttcctatggttttcaattgataaaaagaaatgagtgttttcctatccacaattat |
263 |
Q |
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| T |
4795127 |
attagtatttctatttccttcgtatggtttttcattaataaaaa--aattagtgttttcctatccacgattat |
4795057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 54
Target Start/End: Complemental strand, 15028985 - 15028957
Alignment:
| Q |
26 |
acatttaaaatatgtgaacttcagccact |
54 |
Q |
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| T |
15028985 |
acatttaaaatatgtgaacttcagccact |
15028957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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