View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_high_2 (Length: 401)
Name: NF9764_high_2
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 11 - 385
Target Start/End: Original strand, 28805627 - 28806001
Alignment:
| Q |
11 |
caaaggggagcaaatacaaatatttcaaactgaaaaagatactcatgaaagaaaatacattcatgaatacatatgagtatgtgacgcactttaacggatc |
110 |
Q |
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| T |
28805627 |
caaaagggagcaaatacaaatatttcaaactgaaaaagatactcatgaaagaaaatacattcatgaatacatatgagtatgtgacgcactttaacggatc |
28805726 |
T |
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| Q |
111 |
tggcacatatgaagacaattgtagcacgtgtgcttcttcgctgggcagcaattgagctctggtggagatgtggttactatcgtagcgagcctacgatgat |
210 |
Q |
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| T |
28805727 |
tggcacatatgaagacaattgtagcacgtgtgcttcttcgctgggcagcaattgagctctagtggagatgtagttagtatcgtagcgagcctacgatgat |
28805826 |
T |
|
| Q |
211 |
attctagcggaagcacgatgcttgtcgagcttggccatgaaattcaagagaagtgaaatccaaacgacttacacatgaaattaatggacaattaagagaa |
310 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |
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| T |
28805827 |
attctagcggaagcacgatgcttgtcgagcttggccatgaaattcaagagaagtgaaatccaaaccacttacacatgaaattaatggacaatgaagagaa |
28805926 |
T |
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| Q |
311 |
acataatgagaggcagaaaagctgtgtaaaggagcgaatttcgggaaagacagaaattaggaagggagacaagag |
385 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28805927 |
acataatgagaggcagaaaagctgtgtaagggagcgaatttcgggaaagacagaaattaggaagggagacaagag |
28806001 |
T |
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