View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_low_1 (Length: 1140)
Name: NF9764_low_1
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_low_1 |
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| [»] scaffold0406 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 859; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 859; E-Value: 0
Query Start/End: Original strand, 16 - 1125
Target Start/End: Complemental strand, 19292748 - 19291646
Alignment:
| Q |
16 |
acatcaactattgtcacaagaggaggatgtagaattttaaagattaattatgatacctattgacatcaatgcatggagata----atttcacaaatgtaa |
111 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
19292748 |
acatcaactattgtcacaagaggtggatgtagaattttaaagattaattatgatacctattgagatcaatgcatggagatatataatttcacaaatgtaa |
19292649 |
T |
|
| Q |
112 |
gatttagtgatgagaaactatactaggatttcttgaaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
211 |
Q |
| |
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||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292648 |
gattttgcgatgagaaactatactaggatttcttggaatatgccttagggaggggttgaaattgatgcatatttcaagaacattttagagaaatttagaa |
19292549 |
T |
|
| Q |
212 |
tatatagcctaaagttgctacatatatttgtgtattgttctgctaaaaccaagattagcttataggctaaaaacatccatcataatttaaacttgaaaag |
311 |
Q |
| |
|
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |
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| T |
19292548 |
ta----gcctaaagttgctacatat--ttgtgtattgttctgctaaaaccaagattagcttatagcctaaaaacatccatcacaatttaaacttgaaaag |
19292455 |
T |
|
| Q |
312 |
ccaaacaaaaatctaaataagtccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
411 |
Q |
| |
|
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292454 |
ccaaacaaaaatctagataaatccacttctagaagcaactttagaaacctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaat |
19292355 |
T |
|
| Q |
412 |
gccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgc |
511 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292354 |
gccaaataatattgaaagcttcactaaactctctcttgtctcatgttactaaaattgaaacttattgctcattttagtccctctttagattgaaaattgc |
19292255 |
T |
|
| Q |
512 |
cctaattattgtttaatattatatattcaggaaatcgatcgcaaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctaaa |
611 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
19292254 |
cctaattattgtttaatgttatatattcaggaa----atcgcaaagcaagagaagattaaatagaaaggcaacctgcatgtcatgtagttactgcctaga |
19292159 |
T |
|
| Q |
612 |
gatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtccg |
711 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
19292158 |
gatttggcaacatagaatttgcatttaggacatctcctcagtttatt-ttcttagcagccgggcgcgtcaacataccatcttctttctccctcctgtcgg |
19292060 |
T |
|
| Q |
712 |
cgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattctt |
811 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19292059 |
tgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttacattgtgcacataacatcctattacaattaggacatattgaattctt |
19291960 |
T |
|
| Q |
812 |
aacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattccctta |
911 |
Q |
| |
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|||| | |||||||||| |||||||| |||||| ||||||||||| |||||||||||| ||| |||| || |||||||||||||||| ||||||| |
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| T |
19291959 |
aacaacctcggttccatcattgatcaaaagagcgaaacattctggaagaggacaatagaatctatacgaaacatctatcaaagccttgcacaatccctta |
19291860 |
T |
|
| Q |
912 |
ccccaccgatcaaaaacctcgtccgnnnnnnnttaaactgcaaaacttaacttttaacgagcctctgcccttggaaataggacacctaatattgaccatg |
1011 |
Q |
| |
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||||||||||||||||||||||| | || ||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
19291859 |
ccccaccgatcaaaaacctcgtctgaaaaaaattgaactgcaaaactttgcttttaacgagcctctgcacttggaaataggacaccgaatattgaccatg |
19291760 |
T |
|
| Q |
1012 |
ttatcttcaagcttggaaccgatgtatttcgccatggaatcagaggaatatgcgtgagagctgccaccgatatagatagcgcccttcattgttttagtat |
1111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
19291759 |
ttatcttcaagcttggaaccgatgtatttcgccatgcaatcagaggaatatgcgtgagagctgccaccgatatagaaagcacccttcattgttttagtat |
19291660 |
T |
|
| Q |
1112 |
gggggcaaattttg |
1125 |
Q |
| |
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|||||||||||||| |
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| T |
19291659 |
gggggcaaattttg |
19291646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 611 - 932
Target Start/End: Complemental strand, 19270825 - 19270507
Alignment:
| Q |
611 |
agatttggcaacatagaatttgcatttaggacatctcctccgtttattattcttagcagccgggcgcgtcaacataccatcttctttctccctcttgtcc |
710 |
Q |
| |
|
||||||||||||||| | | ||||||||||||||| ||||| || |||| ||||||| ||||| |||||||| |||||||||||| ||||| |||| |
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|
| T |
19270825 |
agatttggcaacataaattctgcatttaggacatcgcctccacttcttatccttagcaa---ggcgcatcaacataacatcttctttcttcctctcgtcc |
19270729 |
T |
|
| Q |
711 |
gcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattct |
810 |
Q |
| |
|
|||||||||||||||||| |||||||||| || ||||||||||||||||| ||| ||| |||||| |||||||||||||||||||||||| ||| || | |
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| T |
19270728 |
gcgttcagcttctcaaactcgctgcattcgattccttcatgccatggaaccttacattttgcacaaaacatcctattacaattaggacattctgagtttt |
19270629 |
T |
|
| Q |
811 |
taacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattccctt |
910 |
Q |
| |
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|||||| ||| |||| | |||||||| ||||| | ||| |||| ||| ||||| ||||| || || |||| || || || ||||| |||| || | |
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| T |
19270628 |
taacagtatcgattccgtcattgatcaaaagagcagaacagtctgcaaagggacagtagaacttttctgaaacatcgaacatagcctcacacaacccttg |
19270529 |
T |
|
| Q |
911 |
accccaccgatcaaaaacctcg |
932 |
Q |
| |
|
|||||| ||||||||||||||| |
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| T |
19270528 |
accccagcgatcaaaaacctcg |
19270507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 75; E-Value: 6e-34
Query Start/End: Original strand, 680 - 874
Target Start/End: Complemental strand, 19255051 - 19254857
Alignment:
| Q |
680 |
caacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaactttaaattgtgcacataac |
779 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||| |||||| |||| ||| | ||||||||||||||||||||||||||||||||| |||||||||| ||| |
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|
| T |
19255051 |
caacataacatcctctttctccctctcgtccgcattcagcgtctcgaactcactgcattcaatcccttcatgccatggaactttacattgtgcacagaac |
19254952 |
T |
|
| Q |
780 |
atcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagagcgggacattctggaaatggacaatagaattt |
874 |
Q |
| |
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||||| | ||||| ||||||| || ||| ||||||| || ||| ||| |||||||| ||||| | ||| |||| ||| ||||| |||||||| |
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| T |
19254951 |
atcctttcacaataaggacattctgctttcataacagcctccgtttcatcattgatcaacagagctgaacagtctgcaaagggacagtagaattt |
19254857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 71; E-Value: 1e-31
Query Start/End: Original strand, 744 - 930
Target Start/End: Complemental strand, 19314983 - 19314797
Alignment:
| Q |
744 |
ccttcatgccatggaactttaaattgtgcacataacatcctattacaattaggacatattgaattcttaacagcgtcggttccatggttgatcaagagag |
843 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||| |||||| ||||||| || ||||||| | |||||| || | |
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|
| T |
19314983 |
ccttcatgccatggaactttacattgtgcacaaaacatcctattacaattagggcattctgaatttctaacagcttccgttccatcatcgatcaaaagtg |
19314884 |
T |
|
| Q |
844 |
cgggacattctggaaatggacaatagaatttatcagaaatattgatcaaagccttgcacattcccttaccccaccgatcaaaaacct |
930 |
Q |
| |
|
| | ||| ||||||||||||||||||||||||| |||| || || |||||||| || | ||||||||||||| |||||||||| |
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| T |
19314883 |
ctgaacagtctggaaatggacaatagaatttattcgaaacatcgaacaaagcctcacaaagcgccttaccccaccgttcaaaaacct |
19314797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 990 - 1109
Target Start/End: Complemental strand, 19314738 - 19314619
Alignment:
| Q |
990 |
aggacacctaatattgaccatgttatcttcaagcttggaaccgatgtatttcgccatggaatcagaggaatatgcgtgagagctgccaccgatatagata |
1089 |
Q |
| |
|
||||||| ||| ||||| ||||| ||||||||||||||||| ||||| | |||| | |||||||| ||||| ||||||| | || | ||| |||| | |
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| T |
19314738 |
aggacactgaattttgacgatgttttcttcaagcttggaaccaatgtacatggccacgcaatcagagcaatatacgtgagaacaaccgctgatgtagaaa |
19314639 |
T |
|
| Q |
1090 |
gcgcccttcattgttttagt |
1109 |
Q |
| |
|
|| |||||||||||||||| |
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| T |
19314638 |
gcatccttcattgttttagt |
19314619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 766 - 816
Target Start/End: Complemental strand, 19260483 - 19260433
Alignment:
| Q |
766 |
attgtgcacataacatcctattacaattaggacatattgaattcttaacag |
816 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||| |||||| ||||||| |
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|
| T |
19260483 |
attgtgcataaaacatcctattacaattaggacattctgaatttttaacag |
19260433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 360 - 410
Target Start/End: Complemental strand, 33798907 - 33798857
Alignment:
| Q |
360 |
ctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaa |
410 |
Q |
| |
|
||||||||||| || ||| ||||||||||||||||| ||||||| |||||| |
|
|
| T |
33798907 |
ctataaatagataagcatatgtgcaattgtattcaagcctttgagatgtaa |
33798857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 681 - 759
Target Start/End: Original strand, 13206731 - 13206809
Alignment:
| Q |
681 |
aacataccatcttctttctccctcttgtccgcgttcagcttctcaaacccgctgcattcaatcccttcatgccatggaa |
759 |
Q |
| |
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|||||| ||||||||| | ||||| ||||| |||| ||||| ||| || ||||||||||||||||||||||||||| |
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| T |
13206731 |
aacatatcatcttcttcccgcctctcatccgcattcatcttctaaaagtcggtgcattcaatcccttcatgccatggaa |
13206809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0406 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0406
Description:
Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 358 - 435
Target Start/End: Original strand, 6313 - 6389
Alignment:
| Q |
358 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
435 |
Q |
| |
|
|||||||||||||| | ||| ||| |||||||||||| ||||||| ||| |||| | |||||||||||| ||||||| |
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|
| T |
6313 |
acctataaatagacttatatgggtgaaattgtattcaagcctttgagatgcaatgtc-aataatattgaaggcttcac |
6389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 358 - 435
Target Start/End: Original strand, 51246655 - 51246731
Alignment:
| Q |
358 |
acctataaatagacaaacatgtgtgcaattgtattcaaacctttgatatgtaatgccaaataatattgaaagcttcac |
435 |
Q |
| |
|
|||||||| ||||| | ||| |||||||||||||||| |||||| |||||||| | |||||||||||| ||||||| |
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|
| T |
51246655 |
acctataagtagacttatatgggtgcaattgtattcaagcctttgggatgtaatgtc-aataatattgaaggcttcac |
51246731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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