View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_low_12 (Length: 238)
Name: NF9764_low_12
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 36 - 223
Target Start/End: Original strand, 24959594 - 24959781
Alignment:
| Q |
36 |
tgtgagaccaatttctattagaaagtttttgaatcaatttgcagtaaggatgacagaaacacccccagacctcagtagtgatattctttctttaagattt |
135 |
Q |
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| T |
24959594 |
tgtgagaccaatttctattagaaagtttttgaatcaatttgcagtaaggatgacagaaacacccccagacctcagtagtgatattctttctttaagattt |
24959693 |
T |
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| Q |
136 |
tgttaatgattgataatnnnnnnntggaatcaatgattaaccattttttcatggtttctcatttcattcaattatttcatggaatatg |
223 |
Q |
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| T |
24959694 |
tgttaatgattgataataaaaaaatggaatcaatgattaaccattttttcatggtttctcatttcattccattatttcatggaatatg |
24959781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 36 - 226
Target Start/End: Original strand, 24955098 - 24955283
Alignment:
| Q |
36 |
tgtgagaccaatttctattagaaagtttttgaatcaatttgcagtaaggatgacagaaacacccccagacctcagtagtgatattctttctttaagattt |
135 |
Q |
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|||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||| ||||||||| || |
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| T |
24955098 |
tgtgagaccaatttttatcagaaagtttttgaatcaatttgcagtaaggatgaaagaaacaccc--------tagtagtaatattatttctttaacatgg |
24955189 |
T |
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| Q |
136 |
tgttaatgattg--ataatnnnnnnntggaatcaat-gattaaccattttttcatggtttctcatttcattcaattatttcatggaatatgtga |
226 |
Q |
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||||||||||| | || |||||||||| |||||||||||||||||| ||||| |||||||||| |||||||| ||| |||||||| |
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| T |
24955190 |
agttaatgattggtaaaaagaaaagatggaatcaatggattaaccattttttcatagtttcacatttcattccattatttcttgggatatgtga |
24955283 |
T |
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