View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_low_2 (Length: 470)
Name: NF9764_low_2
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 172; Significance: 3e-92; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 261 - 460
Target Start/End: Complemental strand, 5980716 - 5980517
Alignment:
| Q |
261 |
caggctctgatcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttga |
360 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||||||||||||| |
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| T |
5980716 |
caggcactgagcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaatttcttaatatgccaaaacaagattcaaatttga |
5980617 |
T |
|
| Q |
361 |
cctcaaagtgtgttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaacctttg |
460 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5980616 |
cctcaaagtgtgttcaaactagtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaacctttg |
5980517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 5980956 - 5980777
Alignment:
| Q |
21 |
tctgaatgtgtcttatcatgttagtaattttatagaccagaactgattaacggaagatccatcagaagaccagacgaacaaacgaaagacacatacaagg |
120 |
Q |
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|||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||| |
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| T |
5980956 |
tctggatgtgtcttattatgttagtaattttatcgaccataactgattaacggaagatccatcagaagatcagacgaaccaacgaaagacacatacaagg |
5980857 |
T |
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| Q |
121 |
attaaactgaataacaaaacacttgaaagattcatgaactataatgacagtagtcacactttcaaggaccaaaatggtta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5980856 |
attaaactgaataacaaaacacttgaaagattcatgaactataatgacagtagtcacactttcaaggaccaaaatggtta |
5980777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 261 - 459
Target Start/End: Complemental strand, 5995410 - 5995211
Alignment:
| Q |
261 |
caggctctgatcctcctagcagcttctttgacatcaaaatcta-cactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttg |
359 |
Q |
| |
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|||||| ||| |||||| |||||||| ||||||||||||| || |||| || |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
5995410 |
caggctttgagcctccttgcagcttccttgacatcaaaatttaacactgactagtggactgaaagaattttttaatgagcaaaaacaagattcaaatttg |
5995311 |
T |
|
| Q |
360 |
acctcaaagtgtgttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttcatttcaaccttt |
459 |
Q |
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||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| | | ||||||||||||| ||||||||||||||||||||||||| |
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| T |
5995310 |
acctcaaagtgtgttcaaactagtaggcttgataaagttgcaaagaagcctaaactagaagactgagttattatacagttgcagtttcatttcaaccttt |
5995211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 273 - 448
Target Start/End: Complemental strand, 5993036 - 5992860
Alignment:
| Q |
273 |
ctcctagcagcttctttgacatcaaaatctacactcacaagt-ggactagaagaattttttaatgagcaaaaacaagattcaaatttgacctcaaagtgt |
371 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||| || ||| ||||||||||| ||| ||||| || |||||| ||||||||||||| ||||||| | |
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| T |
5993036 |
ctccttgcagcttccttgacatcaaaatttacactgactagtcggactagaagactttcataatgtgctaaaacacaattcaaatttgacgtcaaagtat |
5992937 |
T |
|
| Q |
372 |
gttcaaacttgtagacatgataaagttgcaaagaagcctaaacttgtacactgagttattattcagttgcagtttca |
448 |
Q |
| |
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| |||||| |||||| |||| || ||||||| | ||||||| | | ||| |||||||||||||||||||||| |
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| T |
5992936 |
atacaaactagtagacttgatgaacttgcaaatgatcctaaaccataagattgaattattattcagttgcagtttca |
5992860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 261 - 369
Target Start/End: Original strand, 5632787 - 5632895
Alignment:
| Q |
261 |
caggctctgatcctcctagcagcttctttgacatcaaaatctacactcacaagtggactagaagaattttttaatgagcaaaaacaagattcaaatttga |
360 |
Q |
| |
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|||||| ||| ||| || |||||||| | |||||||||| |||||| || |||||||||||| | ||||||| || || ||||||||| |||||||||| |
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| T |
5632787 |
caggctttgagcctacttgcagcttcccttacatcaaaatttacactgactagtggactagaaaacttttttattgtgccaaaacaagaatcaaatttga |
5632886 |
T |
|
| Q |
361 |
cctcaaagt |
369 |
Q |
| |
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| ||||||| |
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| T |
5632887 |
catcaaagt |
5632895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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