View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_low_5 (Length: 392)
Name: NF9764_low_5
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 23 - 382
Target Start/End: Original strand, 3361281 - 3361640
Alignment:
| Q |
23 |
agtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattc |
122 |
Q |
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| T |
3361281 |
agtgtctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgaccgcagcgtcaagttggtcgattc |
3361380 |
T |
|
| Q |
123 |
ttttggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaat |
222 |
Q |
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| T |
3361381 |
ttttggtcaaagcactacaacaaatttcaggccagttttcatgctcaatacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaat |
3361480 |
T |
|
| Q |
223 |
ttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaag |
322 |
Q |
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| T |
3361481 |
ttcaacatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaag |
3361580 |
T |
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| Q |
323 |
ctacagtaaattatcaacatacacggtgggatttatctcctcgaattagtcagtcctatg |
382 |
Q |
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| T |
3361581 |
ctacagtaaattatcaacatagacggttgaatttgtctcctcgaattagtcagtcctatg |
3361640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 27 - 333
Target Start/End: Original strand, 35907382 - 35907688
Alignment:
| Q |
27 |
tctcagcaggtttactatgcaataggacctgcatcgctacataatcggtatgatcactctttaaagtggtgactgcagcgtcaagttggtcgattctttt |
126 |
Q |
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| T |
35907382 |
tctcagctggtccactatccaatagtagctgcacctctgcatcatcagcatgaccactcttcaaagtgttaaccgcaacatcaagctggttgattttttc |
35907481 |
T |
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| Q |
127 |
ggtcaaagcactacaacaaatttcaggccagttttcatgctcagtacaggccaaatcattctcaaggcacaagagatcattttcgagtttctcaatttca |
226 |
Q |
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|||||| || | || || ||||||||||||||||||| ||||| |||||||| ||||||| |||| || ||||| |||| | || |||||| ||| |
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| T |
35907482 |
tgtcaaaccattgcagcatatttcaggccagttttcattttcagtccaggccaattcattctgaagggacgcgagattcatttccaattgctcaatctca |
35907581 |
T |
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| Q |
227 |
acatctgccttggtgttcaaaattctcaaaacttgaacacatgattccacattcaaggcatgttcttcaatctcatctgcaaaactcaacagaaagctac |
326 |
Q |
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|||||| |||||| ||| | ||||||||| |||||||| | | | ||| | ||||| ||| || || ||||||||||||||||||| |||||| | |
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| T |
35907582 |
ttatctgcattggtgatcatacatctcaaaacctgaacacagcacttctcatccttggcatcttcctccatatcatctgcaaaactcaacaaaaagctcc |
35907681 |
T |
|
| Q |
327 |
agtaaat |
333 |
Q |
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||||||| |
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| T |
35907682 |
agtaaat |
35907688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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