View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9764_low_6 (Length: 344)
Name: NF9764_low_6
Description: NF9764
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9764_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 38 - 333
Target Start/End: Complemental strand, 6580910 - 6580615
Alignment:
| Q |
38 |
cttattcagttgaaaatactataaagcttaatggcgcttgtgcatttgcatttcatccaactctagaatggatttttgttggtgatcgacgtggtacact |
137 |
Q |
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| T |
6580910 |
cttattcagttgaaaatactataaagcttaatggcgcttgtgcatttgcatttcatccaactctagaatggatttttgtcggtgatcgacgtggtacact |
6580811 |
T |
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| Q |
138 |
attggcatgggatgtatcaatcgagaagcctagtatgattggaatgtgagtgactttagtttacctttggtttaagtttcttcatcatctaactgaaaga |
237 |
Q |
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| T |
6580810 |
attggcatgggatgtatcaatcgagaagcctagtatgattggaatgtgagtgactgtagtttacctttggtttaagtttcttcatcatctaactgaaaga |
6580711 |
T |
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| Q |
238 |
cctagcatcatggttatctatttaaactttgttaaatacacatatcctattgacggaaatgttcatgtctttgttattttggttactcttgttctt |
333 |
Q |
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| T |
6580710 |
cctagcatcatggttatctatttaaactttgttaaatacacatatcctattgacggaaatgttcatgtctttgttattttggttactcttgttctt |
6580615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 34238881 - 34239030
Alignment:
| Q |
40 |
tattcagttgaaaatactataaagcttaatggcgcttgtgcatttgcatttcatccaactctagaatggatttttgttggtgatcgacgtggtacactat |
139 |
Q |
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||||||||||| ||||| || ||||||| ||| ||| ||||||||||||||||||||||||| || |||||||||||||| ||||| | |||||||| |
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| T |
34238881 |
tattcagttgacaataccattaagcttattggggctggtgcatttgcatttcatccaactctggagtggatttttgttggggatcggcagggtacacttc |
34238980 |
T |
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| Q |
140 |
tggcatgggatgtatcaatcgagaagcctagtatgattggaatgtgagtg |
189 |
Q |
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| T |
34238981 |
tggcatgggatgtatcaacagagagaccaagtatgattggaatgtgagtg |
34239030 |
T |
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