View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9765_high_1 (Length: 372)
Name: NF9765_high_1
Description: NF9765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9765_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 51403667 - 51403311
Alignment:
| Q |
1 |
cttagccatgtatgcaagcaacggtcttatagcaaaaactgccaagagaataaaagcagtaccacagagcataacccaaagtgaaatcaggggcgacgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403667 |
cttagccatgtatgcaagcaacggtcttatagcaaaaactgcaaagagaataaaagcagtaccacagagcataacccaaagtgaaatcaggggcgacgtg |
51403568 |
T |
|
| Q |
101 |
tcatcgccagataatgatatggctagagcgagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggtta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403567 |
tcatcgccagataatgatatggctagagcaagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggtta |
51403468 |
T |
|
| Q |
201 |
gcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaaagggacaggttgtgcaccttt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51403467 |
gcagtttgagctcagctaggattcgagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaaagggacaggttgtgcaccttt |
51403368 |
T |
|
| Q |
301 |
ggagattgtggctctaagaacaatggatgttcctatgccaagaacaaatgggaatgt |
357 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
51403367 |
ggagattgtggctctaagaacaacggatgttcctatgccaagaacaaatgggaatgt |
51403311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 125 - 279
Target Start/End: Original strand, 29983284 - 29983438
Alignment:
| Q |
125 |
agagcgagaagtacccaggctgcaacatcattaacagcagctgctgacattgctatacgaccaacatccgtggttagcagtttgagctcagctaggattc |
224 |
Q |
| |
|
||||| ||||||| ||| || || || ||||| |||||||| ||||||||||| || ||||||||||| || || || |||||||| ||||||||||||| |
|
|
| T |
29983284 |
agagcaagaagtatccaagcagcgacgtcattgacagcagcagctgacattgccatccgaccaacatcggttgtgaggagtttgagttcagctaggattc |
29983383 |
T |
|
| Q |
225 |
gagcgaggacgggaaatgctgtgattgagagagcaacacccatgaagacaaggaa |
279 |
Q |
| |
|
|||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||||| |
|
|
| T |
29983384 |
gagcaaggacaggaaaggctgtgatcgagagagcaacgcccatgaaaacaaggaa |
29983438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University