View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9765_high_8 (Length: 227)
Name: NF9765_high_8
Description: NF9765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9765_high_8 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 215; Significance: 1e-118; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36877187 - 36876961
Alignment:
| Q |
1 |
tgtgtgagcttgttctggaaatttatggtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgttaacttcatcggat |
100 |
Q |
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| T |
36877187 |
tgtgtgagcttgttctggaaatttattgtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgttaacttcatcggat |
36877088 |
T |
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| Q |
101 |
gaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaatttgttcttgatgctaatgtatcattatttatcaattgccg |
200 |
Q |
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| T |
36877087 |
gaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaataatgaaattgttcttgatgctaatgtatcattatttatcaattgccg |
36876988 |
T |
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| Q |
201 |
ctatatttataccgaagaatctaatac |
227 |
Q |
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| T |
36876987 |
ctatatttataccgaagaatctaatac |
36876961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 36896154 - 36895928
Alignment:
| Q |
1 |
tgtgtgagcttgttctggaaatttatggtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgttaacttcatcggat |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36896154 |
tgtgtgagcttgttctggaaatttattgtacaaccttattacactatcccatttaccttccaatgtgtactcacttataaaatcgttaatttcatcggat |
36896055 |
T |
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| Q |
101 |
gaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaatttgttcttgatgctaatgtatcattatttatcaattgccg |
200 |
Q |
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| T |
36896054 |
gaaatgttgagtaatatgttatcactatcaacaatagcagtcatggtggcaaaaatgaaattgttcttgatgctaatgtatcattatttatcaattgccg |
36895955 |
T |
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| Q |
201 |
ctatatttataccgaagaatctaatac |
227 |
Q |
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| T |
36895954 |
ctatatttataccgaagaatctaatac |
36895928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 36889279 - 36889191
Alignment:
| Q |
47 |
tcccatttaccttccaatgtgtactcacttataaaatcgttaacttcatcggatgaaatgttgagtaatatgttatcactatcaacaat |
135 |
Q |
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||||||||||||||| |||| ||||||| || |||||| || |||||||||| ||||||||||||||||||||| ||||||||| |||| |
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| T |
36889279 |
tcccatttaccttcccatgtatactcacctagaaaatcatttacttcatcgggtgaaatgttgagtaatatgttgtcactatcaccaat |
36889191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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