View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9765_low_5 (Length: 250)
Name: NF9765_low_5
Description: NF9765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9765_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12382445 - 12382681
Alignment:
| Q |
1 |
attatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaacacaatgattgatcatcg |
100 |
Q |
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| T |
12382445 |
attatgatgtgttacgatagagaaatatgactagtgt-agaacaacaaatccgactctaaagaaaatagatgaatcacgaaacacaatgattgatcatcg |
12382543 |
T |
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| Q |
101 |
agttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtacaaattatatttaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12382544 |
agttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtacaaattatatttaaaaa |
12382643 |
T |
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| Q |
201 |
ctacaaaattgcaagaaggcagaagtttttgtctccta |
238 |
Q |
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| T |
12382644 |
ctacaaaattgcaagaagacataagtttttgtctccta |
12382681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 12386512 - 12386748
Alignment:
| Q |
1 |
attatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaacacaatgattgatcatcg |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
12386512 |
attatgatgtgttacgatagagaaatatgactagtgt-agaacaacaaatccgactctaaagaaaatagatgaatcacgaaacacaatgattgatcatcg |
12386610 |
T |
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| Q |
101 |
agttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtacaaattatatttaaaaa |
200 |
Q |
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| T |
12386611 |
agttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtacaaattatatttaaaaa |
12386710 |
T |
|
| Q |
201 |
ctacaaaattgcaagaaggcagaagtttttgtctccta |
238 |
Q |
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| T |
12386711 |
ctacaaaattgcaagaagacataagtttttgtctccta |
12386748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 12369207 - 12369424
Alignment:
| Q |
1 |
attatgatgtgttacgatagagaaatatgactagtgttagaacaacaaatccaactctaaagaaaacagatgaatcacgaaacacaatgattgatcatcg |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12369207 |
attatgatgtgttatgatagagaaatatgactagtgttagaacaacaaattcgactctaaagaaaacagatgaatcacgaaacacaatgattgatcatca |
12369306 |
T |
|
| Q |
101 |
agttcagtcaatatgccaacatctccgacagcagagtgactgttgtggtttttctgttatgcaatgcttaaggttacatagtacaaattatatttaaaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |||||||| ||||||||||||||||||| | | |||||||| |
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| T |
12369307 |
agttcagtcaatatgccaacatctccgacagctgtgtgactgttgtggtttttctgtaatgcaatgtttaaggttacatagtacaaggtgtgtttaaaaa |
12369406 |
T |
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| Q |
201 |
ctacaaaattgcaagaag |
218 |
Q |
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|||||||||||||||||| |
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| T |
12369407 |
ctacaaaattgcaagaag |
12369424 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 186
Target Start/End: Original strand, 15846717 - 15846753
Alignment:
| Q |
150 |
ttttctgttatgcaatgcttaaggttacatagtacaa |
186 |
Q |
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|||||| |||||||||||||||| ||||||||||||| |
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| T |
15846717 |
ttttctattatgcaatgcttaagattacatagtacaa |
15846753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 15860777 - 15860813
Alignment:
| Q |
35 |
tgttagaacaacaaatccaactctaaagaaaacagat |
71 |
Q |
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| T |
15860777 |
tgttagaacaacaaacccaactctaaagcaaacagat |
15860813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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