View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9765_low_6 (Length: 241)
Name: NF9765_low_6
Description: NF9765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9765_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 139; Significance: 7e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 16757831 - 16758022
Alignment:
| Q |
19 |
tctgagtgacacaaatttgcatacctgagttagagtcaagtaagattgttagtgatacatctaaaaatatggagaggaaagaatgttcatgaagagacat |
118 |
Q |
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| T |
16757831 |
tctgagtgacacaaatttgcatacctgagttagagtcaagtaagattgttagtgatatatctaaaaatatggag--gaaagaatgttcatgaagagacat |
16757928 |
T |
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| Q |
119 |
gaacaatatggagaaaagaggacaatggcaatggaatttagaaaatgcaccaactctgctaagtgaaatgtgaggacagaagataaaaggttag |
212 |
Q |
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| T |
16757929 |
gaacaatatggagaaaagaggacaatgacgatggaatttagaaaatacatcgactctgctaaatgaaatatgaggacacaaggtaataggttag |
16758022 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 73
Target Start/End: Original strand, 32741877 - 32741909
Alignment:
| Q |
41 |
acctgagttagagtcaagtaagattgttagtga |
73 |
Q |
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| T |
32741877 |
acctgagttagagtcaagtcagattgttagtga |
32741909 |
T |
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