View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9765_low_7 (Length: 237)
Name: NF9765_low_7
Description: NF9765
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9765_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 164; Significance: 9e-88; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 36895927 - 36895764
Alignment:
| Q |
1 |
ttatataaataaataaaacaacatctcatgtgatgtaactttttctacatgacaaggaaagaataaattaatgggttatgtgaatttgaagagtgaaaaa |
100 |
Q |
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| T |
36895927 |
ttatataaataaataaaacaacatctcatgtgatgtaactttttctacatgacaaggaaagaataaattaatgggttatgtgaatttgaagagtgaaaaa |
36895828 |
T |
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| Q |
101 |
tgtaggacgactttattcttgcaatccttttccttttggacaaacatgccattctcgtgttctg |
164 |
Q |
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| T |
36895827 |
tgtaggacgactttattcttgcaatccttttccttttggacaaacatgccattctcgtgttctg |
36895764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 36876960 - 36876846
Alignment:
| Q |
1 |
ttatataaataaataaaacaacatctcatgtgatgtaactttttctacatgacaaggaaagaataaattaatgggttatgtgaatttgaagagtgaaaaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||||||||| ||||||||||||||| |
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| T |
36876960 |
ttatataaataaataaaacaacatctcatgtgatgtaactttttctagatcacaaggaaagaataaattaatgtgttatgtgaacttgaagagtgaaaaa |
36876861 |
T |
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| Q |
101 |
tgtaggacgacttta |
115 |
Q |
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| T |
36876860 |
tgtaggacgacttta |
36876846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 223
Target Start/End: Complemental strand, 36895735 - 36895705
Alignment:
| Q |
193 |
aggccctgtattgcagtccctgggttgatag |
223 |
Q |
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| T |
36895735 |
aggccctgtattgcagtccctgggttgatag |
36895705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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