View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_high_10 (Length: 267)
Name: NF9766_high_10
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_high_10 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 262
Target Start/End: Original strand, 39600824 - 39601080
Alignment:
| Q |
6 |
ccaatacattgccctttgaaatcctctttgctctaaccatatccttccaggaaatgggcaaggaatacgcccactaacaaataagcaacttaatcaagtg |
105 |
Q |
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| T |
39600824 |
ccaatacattgccctttgaaatcctctttgctctaaccatatccttccaggaaatgggcaaggaatacgcccactaacaaataagtaacttaatcaagtg |
39600923 |
T |
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| Q |
106 |
tttatatcatataagtgcttatgtaaaagttatttatttctataacnnnnnnngaaagtcaaaacattttcataagttgttttggcaagctatcctgaag |
205 |
Q |
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| T |
39600924 |
tttatatcatataagtgcttatgtacaagttatttatttctataacaaaaaaaaaaagtcaaaacattttcataagttgttttggcaagctatcctgaag |
39601023 |
T |
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| Q |
206 |
agtttatgcccttatgatgaagttgtgtttaatttacttgatagattacctccaaac |
262 |
Q |
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| T |
39601024 |
agtttatgcccttatgatgaaattgtgtttaatttacttgatagattacctccaaac |
39601080 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 104 - 140
Target Start/End: Original strand, 46213722 - 46213758
Alignment:
| Q |
104 |
tgtttatatcatataagtgcttatgtaaaagttattt |
140 |
Q |
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| T |
46213722 |
tgtttatatcatataagtgcttatgtaaaagctattt |
46213758 |
T |
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