View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_high_14 (Length: 250)
Name: NF9766_high_14
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_high_14 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 29207969 - 29207730
Alignment:
| Q |
11 |
cataggtattaccttaaatgagaagttactaaacgagtactgcacgccaagagctgaattaccgaattctgttaaactagcgcattcatcaccctgctta |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207969 |
cataggtattaccttaaatgagaagttactaaacgagtactgcacgccaagagctgaattaccgaattctgttaaactagcgcattcatcaccctgctta |
29207870 |
T |
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| Q |
111 |
accagatattgtcagaaaaatcatggtaaaagaggactgacagaaaaatgacatgaggtgaaatcnnnnnnnncaaactatattaaaacacattatcata |
210 |
Q |
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| T |
29207869 |
accagatattgtcagaaaaatcatggtaaaagaggactgacagaaaaatgacatgaggtgaaatcttttttttcaaactatattaaaacacattatcata |
29207770 |
T |
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| Q |
211 |
tacttaaaatcaagaaaatcaaattaaaaattattcttac |
250 |
Q |
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| T |
29207769 |
tacttaaaatcaagaaaatcaaattaaaaattattcttac |
29207730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 175
Target Start/End: Original strand, 12643716 - 12643880
Alignment:
| Q |
11 |
cataggtattaccttaaatgagaagttactaaacgagtactgcacgccaagagctgaattaccgaattctgttaaactagcgcattcatcaccctgctta |
110 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
12643716 |
cataggtattaccttaaacgagaagttactaaacgagtactgcacgccaagagctgaattactgaattctgttaaactagcgcattcatcgccctgctta |
12643815 |
T |
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| Q |
111 |
accagatattgtcagaaaaatcatggtaaaagaggactgacagaaaaatgacatgaggtgaaatc |
175 |
Q |
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| T |
12643816 |
accagatatcgtcagaaaaatcatggtaaaagaggactgacagaaaaatgacatgaggtgaaatc |
12643880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 196 - 250
Target Start/End: Original strand, 12644018 - 12644072
Alignment:
| Q |
196 |
aaacacattatcatatacttaaaatcaagaaaatcaaattaaaaattattcttac |
250 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12644018 |
aaacacattatcatatacttaaaatcaagaaaataaaattaaaaattattcttac |
12644072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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