View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9766_high_2 (Length: 474)

Name: NF9766_high_2
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9766_high_2
NF9766_high_2
[»] chr1 (4 HSPs)
chr1 (8-456)||(13273552-13274003)
chr1 (220-373)||(38204383-38204537)
chr1 (219-264)||(15283314-15283359)
chr1 (187-255)||(32888279-32888347)
[»] chr5 (4 HSPs)
chr5 (184-373)||(22179459-22179648)
chr5 (184-373)||(5909543-5909733)
chr5 (184-270)||(24177187-24177273)
chr5 (187-272)||(27679680-27679765)
[»] chr7 (4 HSPs)
chr7 (184-373)||(30802254-30802443)
chr7 (184-373)||(19511888-19512078)
chr7 (184-270)||(34103053-34103139)
chr7 (187-263)||(33822005-33822081)
[»] chr4 (6 HSPs)
chr4 (202-373)||(32348806-32348977)
chr4 (220-266)||(48029228-48029274)
chr4 (184-264)||(56337978-56338058)
chr4 (184-270)||(55261564-55261650)
chr4 (190-263)||(34104919-34104992)
chr4 (201-262)||(53569591-53569652)
[»] chr2 (4 HSPs)
chr2 (184-313)||(44941294-44941422)
chr2 (184-266)||(18634543-18634625)
chr2 (184-265)||(31265804-31265885)
chr2 (220-263)||(33280670-33280713)
[»] chr6 (3 HSPs)
chr6 (184-308)||(31706305-31706431)
chr6 (186-266)||(6936970-6937050)
chr6 (188-249)||(14586091-14586152)
[»] scaffold0057 (1 HSPs)
scaffold0057 (201-266)||(3430-3495)


Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 8 - 456
Target Start/End: Complemental strand, 13274003 - 13273552
Alignment:
8 ttggtgtttgagtaaataaagaatggcaatcaaatgtcgctgaatatatagacaacggatcttgttaacgagttccttcgacacactattcaaacaattt 107  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
13274003 ttggtgtttgagtaaataaagaatggcaatcaaatgtcgcggaatatatagacaacggatcttgttaacgagttccttcgacacactatttaaacaattt 13273904  T
108 aaattaataaaaagatgttatttatctttttaaagagtgttcgaagacaaccgttagcattctttaaagagtgttcaaagctaataatgccacttttgtg 207  Q
    ||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||| |||||||||||||||||||    
13273903 aaattaataaaaatatgttatttatctttttaaagagtgttcaaagacaactgttagcattctttaaagagtgttgaaagttaataatgccacttttgtg 13273804  T
208 tatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgtattgacggtttgtttcttggggtg 307  Q
    || ||||||  ||||| ||||| ||| |  ||||||||||||| |||||||||||| || ||| |||||| ||||||||||||||||||||||||||||     
13273803 tacggttcacagagatagtggttggaacaattgatttgtttgggtatcaactgaccattgtttatatatacattgtattgacggtttgtttcttggggt- 13273705  T
308 ggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt----nnnnnnnnnnnnnttgacaagctgagctaa 403  Q
    |||||||| | ||||||| |||||||||||  ||||| || |||||||||||||||||||||||||                 ||||| |||||||||||    
13273704 ggttccctggtacaccttgtactgaggaacaattaccgccgttgttaatatatttcattttagtttcttaaaaataaaaaaaattgactagctgagctaa 13273605  T
404 atttgtgacaactaagacccatataagccacaaaaactactggcctacgaaat 456  Q
     |||||||||||||||||||||||||||||||||||||||| |||||||||||    
13273604 gtttgtgacaactaagacccatataagccacaaaaactactagcctacgaaat 13273552  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 220 - 373
Target Start/End: Original strand, 38204383 - 38204537
Alignment:
220 agatggtggtcggaccttttgatttgtttggatatcaactgaccttt-atttgtatatatattgtattgacggtttgtttcttggggtgggttccctagg 318  Q
    |||||||||||||||| |||||||||||||| |||| |||  ||||| |||||||||||| ||||||||||  |||| |||||||||||||||| || |     
38204383 agatggtggtcggaccctttgatttgtttgggtatcgactagcctttgatttgtatatattttgtattgacactttggttcttggggtgggttctctggt 38204482  T
319 acaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    ||||||| |||||||| || ||||||| | || ||||||||| ||||||||||||    
38204483 acaccttctactgagggacctttaccatcgttattaatatatctcattttagttt 38204537  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 15283314 - 15283359
Alignment:
219 gagatggtggtcggaccttttgatttgtttggatatcaactgacct 264  Q
    |||||||||||||||||  |||| ||||||||||||| ||||||||    
15283314 gagatggtggtcggaccccttgacttgtttggatatcgactgacct 15283359  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 32888347 - 32888279
Alignment:
187 gctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatc 255  Q
    ||||||||||| |||||||||| |||||    |||||||||||| |||| |||| ||||||||| ||||    
32888347 gctaataatgcaacttttgtgtttggttgttagagatggtggtcagaccctttgttttgtttgggtatc 32888279  T

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Target: chr5 (Bit Score: 86; Significance: 6e-41; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 184 - 373
Target Start/End: Original strand, 22179459 - 22179648
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 283  Q
    ||||||||||||| ||  |||| ||| |||||   |||||||| |||||||| ||| |||||||||| |||| |||||||||| |||||||||| ||| |    
22179459 aaagctaataatgtcatgtttgagtacggttctcagagatggtagtcggaccatttaatttgtttgggtatcgactgacctttgtttgtatatacattat 22179558  T
284 attgacggtttgtttcttggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    | |||| ||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||  | | |||||||| |||||||||||    
22179559 agtgacagtttgtttcttggggtgggttccttagtactccttatactgaggaacgtttaccaccgatttaaatatattccattttagttt 22179648  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 184 - 373
Target Start/End: Original strand, 5909543 - 5909733
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt-atttgtatatatattg 282  Q
    ||||| ||||| |||||||||||||| | |||   ||||||||||||||||| |||||||||||||| |||||||| ||||||  ||||||||||  |||    
5909543 aaagcaaataacgccacttttgtgtacgattctcagagatggtggtcggaccctttgatttgtttgggtatcaactaacctttgttttgtatatactttg 5909642  T
283 tattgacggtttgtttcttggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    | |||||||||||||| |||||||| ||| | | | ||||||| ||||| ||||| | |||| || ||||||||||||  |||||||||||    
5909643 tcttgacggtttgttttttggggtgagtttcttggtacaccttgtactggggaacctctaccgccgttgttaatatatcccattttagttt 5909733  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 24177273 - 24177187
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 270  Q
    |||||||| || ||||||||| ||||||||||   ||||||||||| ||||   ||| |||| ||||||||| ||||||||||||||    
24177273 aaagctaacaaagccacttttatgtatggttctcagagatggtggttggactcgttgttttgcttggatatcgactgacctttattt 24177187  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 272
Target Start/End: Original strand, 27679680 - 27679765
Alignment:
187 gctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgt 272  Q
    |||||||||| |||||||||||| |||||   || |||||||||||||| | || | ||||||| |||| || ||||||| |||||    
27679680 gctaataatgtcacttttgtgtacggttctcagaaatggtggtcggaccctatgctatgtttgggtatcgaccgacctttgtttgt 27679765  T

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Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 373
Target Start/End: Original strand, 30802254 - 30802443
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 283  Q
    ||||||||||| ||||| |||||||| |||||   |||| |||||||||||| |||||||||||||| |||| ||| |||||| |||  |||||  ||||    
30802254 aaagctaataacgccacgtttgtgtacggttctcagagacggtggtcggaccctttgatttgtttgggtatcgactaacctttgttttcatatactttgt 30802353  T
284 attgacggtttgtttcttggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    |||||| |||||||| |||||||| ||| | | | ||||||| ||||| ||||| | |||| || |||||||||||| ||||||||||||    
30802354 attgacagtttgttttttggggtgagtttcttggtacaccttgtactggggaacctctaccgccgttgttaatatatctcattttagttt 30802443  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 184 - 373
Target Start/End: Complemental strand, 19512078 - 19511888
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt-gtatatatattg 282  Q
    ||||||||||| | ||  |||||||| |||||   ||||||||||||||||| | ||| |||||||| |||| | | |||||| ||| |||||||  |||    
19512078 aaagctaataacgtcatgtttgtgtacggttctcagagatggtggtcggaccctatgaattgtttgggtatcgaataacctttgttttgtatatactttg 19511979  T
283 tattgacggtttgtttcttggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    ||||||||||| |||| |||||||| ||| | | | ||||||| |||||   ||| | |||| || |||||||||||| | ||||||||||    
19511978 tattgacggttagttttttggggtgagtttcttggtacaccttgtactggaaaacctctaccgccgttgttaatatatcttattttagttt 19511888  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 34103139 - 34103053
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 270  Q
    ||||| |||||||||| ||||||||  || ||   ||||||||||||||||| |||  ||| ||||| |||| ||||||||||||||    
34103139 aaagccaataatgccaattttgtgtgcgggtcgcagagatggtggtcggaccatttactttatttgggtatcgactgacctttattt 34103053  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 187 - 263
Target Start/End: Original strand, 33822005 - 33822081
Alignment:
187 gctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacc 263  Q
    |||||||||| ||||||  |||| |||||    ||||||| |||||||| |||||||||||||| |||| |||||||    
33822005 gctaataatgtcactttcatgtacggttctcatagatggtagtcggaccctttgatttgtttgggtatcgactgacc 33822081  T

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Target: chr4 (Bit Score: 64; Significance: 9e-28; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 202 - 373
Target Start/End: Original strand, 32348806 - 32348977
Alignment:
202 tttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgtattgacggtttgtttctt 301  Q
    |||||||| |||||   ||||||||||||||| | |||||||||||||| |||| ||| |||||| ||||||||||  ||||||||||||||||||| ||    
32348806 tttgtgtacggttctcagagatggtggtcggatcctttgatttgtttgggtatcgactaacctttgtttgtatatactttgtattgacggtttgtttttt 32348905  T
302 ggggtgggttccctaggacaccttatactgaggaacgtttaccaccattgttaatatatttcattttagttt 373  Q
    |||||| ||| | | | ||||||| ||||| | ||| | |||| || ||||||||||||  |||||||||||    
32348906 ggggtgagtttcttggtacaccttgtactgggaaacctctaccgccgttgttaatatatcccattttagttt 32348977  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 220 - 266
Target Start/End: Complemental strand, 48029274 - 48029228
Alignment:
220 agatggtggtcggaccttttgatttgtttggatatcaactgaccttt 266  Q
    |||||||||||||||| |||| ||||||||| |||||||||||||||    
48029274 agatggtggtcggaccatttgttttgtttgggtatcaactgaccttt 48029228  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 184 - 264
Target Start/End: Original strand, 56337978 - 56338058
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacct 264  Q
    |||||||| |||||||||||||| ||||||||    |||||||||| |||||  ||| ||||||||| |||| ||||||||    
56337978 aaagctaacaatgccacttttgtttatggttctcaaagatggtggttggaccggttgctttgtttgggtatcgactgacct 56338058  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 270
Target Start/End: Complemental strand, 55261650 - 55261564
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttattt 270  Q
    |||||||| || ||||||||||||||||||||   ||||||||||| |||||  ||  ||||  ||| |||| ||||||||||||||    
55261650 aaagctaacaaagccacttttgtgtatggttctcagagatggtggttggacccgttactttgactgggtatcgactgacctttattt 55261564  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 190 - 263
Target Start/End: Complemental strand, 34104992 - 34104919
Alignment:
190 aataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacc 263  Q
    |||||||||  |||||| ||||||||   ||||||||||||||||| |||| | ||||||| |||| |||||||    
34104992 aataatgcctgttttgtatatggttctcagagatggtggtcggaccctttgttatgtttgggtatcgactgacc 34104919  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 53569652 - 53569591
Alignment:
201 ttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgac 262  Q
    ||||||||| |||||   ||||||||||||||||| |||  ||||||||| |||||||||||    
53569652 ttttgtgtacggttctcagagatggtggtcggaccctttactttgtttgggtatcaactgac 53569591  T

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Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 184 - 313
Target Start/End: Original strand, 44941294 - 44941422
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctttatttgtatatatattgt 283  Q
    |||||||| |||| ||| |||||||| ||||||  ||||||||||||||| | |||||| ||||||  |||||||| ||| || ||||||||||  ||||    
44941294 aaagctaacaatgtcacatttgtgtacggttcacagagatggtggtcggatcctttgatgtgtttgagtatcaactaacc-ttctttgtatatactttgt 44941392  T
284 attgacggtttgtttcttggggtgggttcc 313  Q
    ||| |||||||| |||||||||||||||||    
44941393 attaacggtttggttcttggggtgggttcc 44941422  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 266
Target Start/End: Complemental strand, 18634625 - 18634543
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 266  Q
    |||||||||||| |||| ||||||||||| ||   ||||||||||||||||| |||| | |||||||| |||||| |||||||    
18634625 aaagctaataataccacgtttgtgtatggctctcagagatggtggtcggaccctttgttatgtttggacatcaaccgaccttt 18634543  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 265
Target Start/End: Complemental strand, 31265885 - 31265804
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgacctt 265  Q
    |||||| ||||| ||||||||||||||| |||    |||||||||||||||| |||  ||||||||| ||||||||||||||    
31265885 aaagctcataataccacttttgtgtatgattctcaaagatggtggtcggaccctttactttgtttgggtatcaactgacctt 31265804  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 33280713 - 33280670
Alignment:
220 agatggtggtcggaccttttgatttgtttggatatcaactgacc 263  Q
    ||||||||||||||||| ||| |||||||||||||| |||||||    
33280713 agatggtggtcggacctgttgctttgtttggatatcgactgacc 33280670  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 184 - 308
Target Start/End: Complemental strand, 31706431 - 31706305
Alignment:
184 aaagctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt-at--ttgtatatatat 280  Q
    ||||||||||||||||| |||||||  || ||   ||||||||||||||||||||| |||||||||  |||| |||||||||| ||  |||||||||| |    
31706431 aaagctaataatgccacgtttgtgtgcggctctcagagatggtggtcggaccttttaatttgtttgagtatcgactgacctttgatccttgtatatattt 31706332  T
281 tgtattgacggtttgtttcttggggtgg 308  Q
    |||| ||||  ||||||| |||||||||    
31706331 tgta-tgacattttgttttttggggtgg 31706305  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 6937050 - 6936970
Alignment:
186 agctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 266  Q
    ||||||||| |||| ||||||||| |||||   ||||||| |||| |||| | |||||||||||| |||| ||||||||||    
6937050 agctaataacgccatttttgtgtacggttctcagagatggcggtcagaccctatgatttgtttgggtatcgactgaccttt 6936970  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 14586091 - 14586152
Alignment:
188 ctaataatgccacttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttg 249  Q
    ||||||||||||| |||||||||||| |   ||||||||||||||| | |||| ||||||||    
14586091 ctaataatgccacatttgtgtatggtgcttagagatggtggtcggatcctttgctttgtttg 14586152  T

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Target: scaffold0057 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 266
Target Start/End: Original strand, 3430 - 3495
Alignment:
201 ttttgtgtatggttcagtgagatggtggtcggaccttttgatttgtttggatatcaactgaccttt 266  Q
    |||||| |||||||||   ||||||||||||||||  ||||||||||||| |||| ||||||||||    
3430 ttttgtttatggttcacatagatggtggtcggacccgttgatttgtttgggtatcgactgaccttt 3495  T

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