View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9766_high_21 (Length: 203)

Name: NF9766_high_21
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9766_high_21
NF9766_high_21
[»] chr8 (30 HSPs)
chr8 (32-203)||(34701948-34702114)
chr8 (1-38)||(8951433-8951470)
chr8 (1-34)||(17856516-17856549)
chr8 (1-39)||(18754138-18754176)
chr8 (1-34)||(11798870-11798903)
chr8 (1-33)||(51100-51132)
chr8 (1-33)||(1774342-1774374)
chr8 (1-33)||(2944277-2944309)
chr8 (1-33)||(8251938-8251970)
chr8 (1-33)||(13153928-13153960)
chr8 (1-33)||(13154193-13154225)
chr8 (1-33)||(13568910-13568942)
chr8 (1-33)||(16998996-16999028)
chr8 (1-37)||(17069849-17069885)
chr8 (1-37)||(17578388-17578424)
chr8 (1-33)||(17856781-17856813)
chr8 (1-33)||(18455720-18455752)
chr8 (1-33)||(19176136-19176168)
chr8 (1-33)||(26016569-26016601)
chr8 (1-33)||(28192180-28192212)
chr8 (1-33)||(28572046-28572078)
chr8 (1-33)||(28579639-28579671)
chr8 (1-33)||(29279461-29279493)
chr8 (1-33)||(32675762-32675794)
chr8 (1-33)||(34568490-34568522)
chr8 (1-33)||(39029178-39029210)
chr8 (1-33)||(40530411-40530443)
chr8 (1-33)||(42885054-42885086)
chr8 (1-33)||(43653943-43653975)
chr8 (1-33)||(44250859-44250891)
[»] scaffold0308 (2 HSPs)
scaffold0308 (1-34)||(14353-14386)
scaffold0308 (1-34)||(5292-5325)
[»] chr3 (38 HSPs)
chr3 (1-34)||(54604593-54604626)
chr3 (1-45)||(20862462-20862506)
chr3 (1-33)||(46878444-46878476)
chr3 (1-35)||(31531416-31531450)
chr3 (1-34)||(4024316-4024349)
chr3 (1-34)||(9499502-9499535)
chr3 (1-34)||(37728978-37729011)
chr3 (1-33)||(4024052-4024084)
chr3 (1-33)||(6784463-6784495)
chr3 (1-33)||(7181350-7181382)
chr3 (1-33)||(9779979-9780011)
chr3 (1-33)||(10220933-10220965)
chr3 (1-33)||(12050397-12050429)
chr3 (1-33)||(14428610-14428642)
chr3 (1-33)||(14428874-14428906)
chr3 (1-33)||(16434977-16435009)
chr3 (1-33)||(21756486-21756518)
chr3 (1-33)||(22103934-22103966)
chr3 (1-33)||(25149127-25149159)
chr3 (1-33)||(26306354-26306386)
chr3 (1-33)||(26593770-26593802)
chr3 (1-33)||(26806115-26806147)
chr3 (1-33)||(27687986-27688018)
chr3 (1-33)||(29454791-29454823)
chr3 (1-33)||(32467425-32467457)
chr3 (1-33)||(33360885-33360917)
chr3 (1-33)||(33868713-33868745)
chr3 (1-33)||(35165967-35165999)
chr3 (1-33)||(35868088-35868120)
chr3 (1-33)||(36005769-36005801)
chr3 (1-33)||(37728713-37728745)
chr3 (1-33)||(43868103-43868135)
chr3 (1-33)||(44543782-44543814)
chr3 (1-33)||(45252773-45252805)
chr3 (1-33)||(46049991-46050023)
chr3 (1-33)||(50647684-50647716)
chr3 (1-33)||(51284067-51284099)
chr3 (1-33)||(52058985-52059017)
[»] chr7 (21 HSPs)
chr7 (1-33)||(41003159-41003191)
chr7 (1-35)||(32872380-32872414)
chr7 (1-34)||(21295150-21295183)
chr7 (1-34)||(28060716-28060749)
chr7 (1-34)||(35569656-35569689)
chr7 (1-34)||(41026101-41026134)
chr7 (1-34)||(41252366-41252399)
chr7 (1-34)||(48521028-48521061)
chr7 (1-33)||(19920563-19920595)
chr7 (1-33)||(20075112-20075144)
chr7 (1-33)||(26255096-26255128)
chr7 (1-33)||(28060982-28061014)
chr7 (1-33)||(29286042-29286074)
chr7 (1-33)||(32814433-32814465)
chr7 (1-33)||(33858871-33858903)
chr7 (1-33)||(36698136-36698168)
chr7 (1-33)||(38428412-38428444)
chr7 (1-33)||(38858298-38858330)
chr7 (1-33)||(39197718-39197750)
chr7 (1-33)||(39871618-39871650)
chr7 (1-33)||(40300230-40300262)
[»] chr6 (12 HSPs)
chr6 (1-33)||(13648134-13648166)
chr6 (1-38)||(231110-231147)
chr6 (1-34)||(9038641-9038674)
chr6 (1-42)||(12144043-12144084)
chr6 (1-33)||(4844400-4844432)
chr6 (1-33)||(8743188-8743220)
chr6 (1-33)||(9388529-9388561)
chr6 (1-33)||(11847837-11847869)
chr6 (1-33)||(23398144-23398176)
chr6 (1-33)||(30248647-30248679)
chr6 (1-33)||(34301837-34301869)
chr6 (1-33)||(34741731-34741763)
[»] chr4 (29 HSPs)
chr4 (1-33)||(36391854-36391886)
chr4 (1-36)||(9328245-9328280)
chr4 (1-35)||(4036090-4036124)
chr4 (1-35)||(5375562-5375596)
chr4 (1-35)||(44294787-44294821)
chr4 (1-34)||(26866868-26866901)
chr4 (1-34)||(33413517-33413550)
chr4 (1-30)||(37352547-37352576)
chr4 (1-30)||(37357446-37357475)
chr4 (1-42)||(47228733-47228774)
chr4 (1-33)||(375424-375456)
chr4 (1-33)||(4035825-4035857)
chr4 (1-33)||(4549629-4549661)
chr4 (1-33)||(5743664-5743696)
chr4 (1-33)||(20391442-20391474)
chr4 (1-33)||(20747435-20747467)
chr4 (2-34)||(25708419-25708451)
chr4 (1-33)||(26626007-26626039)
chr4 (1-33)||(29014064-29014096)
chr4 (1-33)||(30771528-30771560)
chr4 (1-33)||(32032998-32033030)
chr4 (1-33)||(34273224-34273256)
chr4 (1-33)||(35675925-35675957)
chr4 (1-33)||(37776742-37776774)
chr4 (1-33)||(45742811-45742843)
chr4 (1-33)||(47806860-47806892)
chr4 (1-33)||(52977982-52978014)
chr4 (1-33)||(53277190-53277222)
chr4 (1-33)||(55631999-55632031)
[»] chr2 (26 HSPs)
chr2 (1-33)||(8841662-8841694)
chr2 (1-33)||(23788969-23789001)
chr2 (1-34)||(7492109-7492142)
chr2 (1-34)||(36131033-36131066)
chr2 (1-33)||(2438225-2438257)
chr2 (1-33)||(2438490-2438522)
chr2 (1-33)||(7491844-7491876)
chr2 (1-33)||(8716897-8716929)
chr2 (1-33)||(9701070-9701102)
chr2 (1-33)||(11201683-11201715)
chr2 (1-33)||(15404712-15404744)
chr2 (1-33)||(16108215-16108247)
chr2 (1-33)||(16669626-16669658)
chr2 (1-33)||(17408299-17408331)
chr2 (1-33)||(20252210-20252242)
chr2 (1-33)||(22182929-22182961)
chr2 (1-33)||(22897656-22897688)
chr2 (1-33)||(27560206-27560238)
chr2 (1-33)||(34062670-34062702)
chr2 (1-33)||(34113791-34113823)
chr2 (1-33)||(34883853-34883885)
chr2 (1-33)||(39833739-39833771)
chr2 (1-33)||(40607702-40607734)
chr2 (1-33)||(41450516-41450548)
chr2 (1-33)||(44573887-44573919)
chr2 (1-33)||(45474351-45474383)
[»] chr1 (30 HSPs)
chr1 (1-35)||(23542244-23542278)
chr1 (1-34)||(1039386-1039419)
chr1 (1-34)||(1046292-1046325)
chr1 (1-38)||(39750116-39750153)
chr1 (1-33)||(943642-943674)
chr1 (1-33)||(1047992-1048024)
chr1 (1-33)||(4102719-4102751)
chr1 (1-33)||(9202245-9202277)
chr1 (1-33)||(11741397-11741429)
chr1 (1-33)||(15811237-15811269)
chr1 (1-33)||(23530542-23530574)
chr1 (1-33)||(23541979-23542011)
chr1 (1-33)||(30290265-30290297)
chr1 (1-33)||(36694854-36694886)
chr1 (1-33)||(36710955-36710987)
chr1 (1-33)||(37951954-37951986)
chr1 (1-33)||(38261340-38261372)
chr1 (1-33)||(38920239-38920271)
chr1 (1-33)||(39362934-39362966)
chr1 (1-33)||(39363199-39363231)
chr1 (1-33)||(39497433-39497465)
chr1 (1-33)||(39497698-39497730)
chr1 (1-33)||(44646536-44646568)
chr1 (1-33)||(44649629-44649661)
chr1 (1-33)||(44649894-44649926)
chr1 (1-33)||(45039412-45039444)
chr1 (1-33)||(46075872-46075904)
chr1 (1-33)||(49907021-49907053)
chr1 (1-33)||(52431179-52431211)
chr1 (1-33)||(52601991-52602023)
[»] scaffold0339 (1 HSPs)
scaffold0339 (1-42)||(7145-7186)
[»] scaffold0122 (1 HSPs)
scaffold0122 (1-42)||(12056-12097)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-38)||(355336-355373)
[»] chr5 (18 HSPs)
chr5 (1-42)||(3028004-3028045)
chr5 (1-42)||(4976295-4976336)
chr5 (1-34)||(9828392-9828425)
chr5 (1-34)||(9828658-9828691)
chr5 (1-42)||(26894878-26894919)
chr5 (1-33)||(186363-186395)
chr5 (1-33)||(1265949-1265981)
chr5 (1-33)||(5527974-5528006)
chr5 (1-33)||(6673233-6673265)
chr5 (1-33)||(7951562-7951594)
chr5 (1-33)||(9020694-9020726)
chr5 (1-33)||(10734528-10734560)
chr5 (1-33)||(14913648-14913680)
chr5 (1-33)||(16127259-16127291)
chr5 (1-33)||(16440931-16440963)
chr5 (1-33)||(22527692-22527724)
chr5 (1-33)||(34662204-34662236)
chr5 (1-33)||(40004414-40004446)
[»] scaffold0604 (1 HSPs)
scaffold0604 (1-33)||(3787-3819)
[»] scaffold0029 (1 HSPs)
scaffold0029 (1-33)||(51687-51719)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-33)||(65378-65410)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-33)||(47640-47672)
[»] scaffold0008 (1 HSPs)
scaffold0008 (1-33)||(259127-259159)


Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 32 - 203
Target Start/End: Original strand, 34701948 - 34702114
Alignment:
Q  32 tacaaaataaattgatgaaaaaaggtatgtctgagtgagttagtcaaaaagtcaaataggcaaaattgggtgatggctagctacctaaacgcactaatgc 131  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34701948 tacaaaataaattgatgaaaaaaggtatgtgtgagtgagttagtcaaaaagtcaaataggcaaaattgggtgatggctagctacctaaacgcactaatgc 34702047  T
Q  132 ttttctttttaactgtcatcacatcattgatggtcaatagagaataatttgataatcgattaatttttgtaa 203  Q
    ||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34702048 ttttctttttaactgt-----catcattgatggtcaatagagaataatttgataatcgattaatttttgtaa 34702114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 8951433 - 8951470
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaa 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  8951433 aaaagggtcttataattagggacggagggagtacaaaa 8951470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 17856549 - 17856516
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  17856549 aaaagggtcttataattaaggacggagggagtac 17856516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 18754176 - 18754138
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaat 39  Q
    |||||||||||||||||| |||||||||||||| |||||    
T  18754176 aaaagggtcttataattagggacggagggagtataaaat 18754138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11798870 - 11798903
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  11798870 aaaagggtcttataattagggacggagggagtac 11798903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51100 - 51132
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  51100 aaaagggtcttataattagggacggagggagta 51132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1774374 - 1774342
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  1774374 aaaagggtcttataattagggacggagggagta 1774342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2944277 - 2944309
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2944277 aaaagggtcttataattagggacggagggagta 2944309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8251938 - 8251970
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  8251938 aaaagggtcttataattagggacggagggagta 8251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 13153960 - 13153928
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  13153960 aaaagggtcttataattagggacggagggagta 13153928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13154193 - 13154225
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  13154193 aaaagggtcttataattagggacggagggagta 13154225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13568910 - 13568942
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  13568910 aaaagggtcttataattaaggacggaggtagta 13568942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16999028 - 16998996
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  16999028 aaaagggtcttataattatggacggagggagta 16998996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17069849 - 17069885
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaa 37  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  17069849 aaaagggtcttataattagggacggaggtagtacaaa 17069885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17578424 - 17578388
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaa 37  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  17578424 aaaagggtcttataattagggacggaggtagtacaaa 17578388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17856781 - 17856813
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  17856781 aaaagggtcttataattagggacggagggagta 17856813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 18455752 - 18455720
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  18455752 aaaagggtcttataattagggacggagggagta 18455720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19176168 - 19176136
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  19176168 aaaagggtcttataattaaggacggaggtagta 19176136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26016601 - 26016569
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  26016601 aaaagggtcttataattagggacggagggagta 26016569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28192180 - 28192212
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  28192180 aaaagggtcttataattagggacggagggagta 28192212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28572078 - 28572046
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  28572078 aaaagggtcttataattagggacggagggagta 28572046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 28579671 - 28579639
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  28579671 aaaagggtcttataattagggacggagggagta 28579639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29279461 - 29279493
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  29279461 aaaagggtcttataattagggacggagggagta 29279493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32675762 - 32675794
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  32675762 aaaagggtcttataattagggacggagggagta 32675794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34568522 - 34568490
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34568522 aaaagggtcttataattagggacggagggagta 34568490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39029210 - 39029178
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39029210 aaaagggtcttataattagggacggagggagta 39029178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40530411 - 40530443
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  40530411 aaaagggtcttataattagggacggagggagta 40530443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 42885086 - 42885054
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  42885086 aaaagggtcttataattagggacggagggagta 42885054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43653975 - 43653943
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  43653975 aaaagggtcttataattagggacggagggagta 43653943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44250891 - 44250859
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  44250891 aaaagggtcttataattagggacggagggagta 44250859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 14353 - 14386
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  14353 aaaagggtcttataattaaggacggagggagtac 14386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5292 - 5325
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||||| ||||||||||||||    
T  5292 aaaagggtcttataattaaagacggagggagtac 5325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 54604593 - 54604626
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||||||||||||||||||||    
T  54604593 aaaagggtcttataattaaggacggagggagtac 54604626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 20862462 - 20862506
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaattg 45  Q
    |||||||||||||||||| ||||||||||||||  ||||||||||    
T  20862462 aaaagggtcttataattagggacggagggagtattaaataaattg 20862506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46878444 - 46878476
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  46878444 aaaagggtcttataattaaggacggagggagta 46878476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 31531416 - 31531450
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  31531416 aaaagggtcttataattagggacggagggagtaca 31531450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4024316 - 4024349
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  4024316 aaaagggtcttataattagggacggagggagtac 4024349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9499502 - 9499535
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  9499502 aaaagggtcttataattagggacggagggagtac 9499535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 37728978 - 37729011
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  37728978 aaaagggtcttataattaaggacagagggagtac 37729011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4024084 - 4024052
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4024084 aaaagggtcttataattagggacggagggagta 4024052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 6784495 - 6784463
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  6784495 aaaagggtcttataattaaggacggaggtagta 6784463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7181382 - 7181350
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  7181382 aaaagggtcttataattagggacggagggagta 7181350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9780011 - 9779979
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  9780011 aaaagggtcttataattagggacggagggagta 9779979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 10220965 - 10220933
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  10220965 aaaagggtcttataattagggacggagggagta 10220933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 12050397 - 12050429
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  12050397 aaaagggtcttataattagggacggagggagta 12050429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14428642 - 14428610
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  14428642 aaaagggtcttataattagggacggagggagta 14428610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 14428874 - 14428906
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  14428874 aaaagggtcttataattagggacggagggagta 14428906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16435009 - 16434977
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  16435009 aaaagggtcttataattagggacggagggagta 16434977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 21756518 - 21756486
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  21756518 aaaagggtcttataattagggacggagggagta 21756486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22103934 - 22103966
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22103934 aaaagggtcttataattagggacggagggagta 22103966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25149127 - 25149159
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  25149127 aaaagggtcttataattagggacggagggagta 25149159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26306386 - 26306354
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    ||||||||||||||||||||||| |||||||||    
T  26306386 aaaagggtcttataattaaggacagagggagta 26306354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26593770 - 26593802
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  26593770 aaaagggtcttataattagggacggagggagta 26593802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26806147 - 26806115
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  26806147 aaaagggtcttataattagggacggagggagta 26806115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27688018 - 27687986
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  27688018 aaaagggtcttataattaaggacggaggtagta 27687986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29454791 - 29454823
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  29454791 aaaagggtcttataattaaggacggaggtagta 29454823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32467457 - 32467425
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  32467457 aaaagggtcttataattaaggacggagagagta 32467425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 33360917 - 33360885
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  33360917 aaaagggtcttataattaaggacggaggtagta 33360885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33868713 - 33868745
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33868713 aaaagggtcttataattagggacggagggagta 33868745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35165967 - 35165999
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||| ||||||||    
T  35165967 aaaagggtcttataattaaggacgaagggagta 35165999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35868088 - 35868120
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  35868088 aaaagggtcttataattagggacggagggagta 35868120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36005769 - 36005801
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36005769 aaaagggtcttataattagggacggagggagta 36005801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 37728745 - 37728713
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  37728745 aaaagggtcttataattagggacggagggagta 37728713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 43868135 - 43868103
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  43868135 aaaagggtcttataattagggacggagggagta 43868103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44543814 - 44543782
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  44543814 aaaagggtcttataattagggacggagggagta 44543782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45252805 - 45252773
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  45252805 aaaagggtcttataattagggacggagggagta 45252773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46049991 - 46050023
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  46049991 aaaagggtcttataattagggacggagggagta 46050023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 50647716 - 50647684
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  50647716 aaaagggtcttataattagggacggagggagta 50647684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51284067 - 51284099
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  51284067 aaaagggtcttataattagggacggagggagta 51284099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52059017 - 52058985
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  52059017 aaaagggtcttataattagggacggagggagta 52058985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 41003159 - 41003191
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  41003159 aaaagggtcttataattaaggacggagggagta 41003191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 32872380 - 32872414
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  32872380 aaaagggtcttataattagggacggagggagtaca 32872414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 21295183 - 21295150
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  21295183 aaaagggtcttataattagggacggagggagtac 21295150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 28060749 - 28060716
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||||||||||| |||||||    
T  28060749 aaaagggtcttataattaaggacggatggagtac 28060716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 35569656 - 35569689
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||||||||||||| |||||    
T  35569656 aaaagggtcttataattaaggacggaggtagtac 35569689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41026101 - 41026134
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  41026101 aaaagggtcttataattagggacggagggagtac 41026134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41252366 - 41252399
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  41252366 aaaagggtcttataattagggacggagggagtac 41252399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 48521061 - 48521028
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  48521061 aaaagggtcttataattagggacggagggagtac 48521028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 19920595 - 19920563
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  19920595 aaaagggtcttataattagggacggagggagta 19920563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20075112 - 20075144
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  20075112 aaaagggtcttataattagggacggagggagta 20075144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 26255128 - 26255096
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  26255128 aaaagggtcttataattagggacggagggagta 26255096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 28060982 - 28061014
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  28060982 aaaagggtcttataattagggacggagggagta 28061014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 29286042 - 29286074
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  29286042 aaaagggtcttataattagggacggagggagta 29286074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 32814465 - 32814433
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  32814465 aaaagggtcttataattagggacggagggagta 32814433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 33858871 - 33858903
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  33858871 aaaagggtcttataattagggacggagggagta 33858903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36698136 - 36698168
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36698136 aaaagggtcttataattagggacggagggagta 36698168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 38428412 - 38428444
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  38428412 aaaagggtcttataattagggacggagggagta 38428444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38858330 - 38858298
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  38858330 aaaagggtcttataattagggacggagggagta 38858298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39197750 - 39197718
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39197750 aaaagggtcttataattagggacggagggagta 39197718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39871618 - 39871650
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39871618 aaaagggtcttataattagggacggagggagta 39871650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40300262 - 40300230
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  40300262 aaaagggtcttataattagggacggagggagta 40300230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 13648134 - 13648166
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  13648134 aaaagggtcttataattaaggacggagggagta 13648166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 231110 - 231147
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaa 38  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  231110 aaaagggtcttataattagggacggagggagtaaaaaa 231147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9038674 - 9038641
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  9038674 aaaagggtcttataattagggacggagggagtac 9038641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 12144043 - 12144084
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| ||||||||||||||  |||||||    
T  12144043 aaaagggtcttataattagggacggagggagtattaaataaa 12144084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4844432 - 4844400
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4844432 aaaagggtcttataattagggacggagggagta 4844400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 8743220 - 8743188
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  8743220 aaaagggtcttataattagggacggagggagta 8743188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9388561 - 9388529
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  9388561 aaaagggtcttataattagggacggagggagta 9388529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 11847837 - 11847869
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  11847837 aaaagggtcttataattagggacggagggagta 11847869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23398144 - 23398176
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  23398144 aaaagggtcttataattagggacggagggagta 23398176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30248679 - 30248647
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  30248679 aaaagggtcttataattagggacggagggagta 30248647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34301837 - 34301869
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34301837 aaaagggtcttataattagggacggagggagta 34301869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34741731 - 34741763
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34741731 aaaagggtcttataattagggacggagggagta 34741763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36391886 - 36391854
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  36391886 aaaagggtcttataattaaggacggagggagta 36391854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9328245 - 9328280
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaa 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  9328245 aaaagggtcttataattagggacggagggagtacaa 9328280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 4036090 - 4036124
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  4036090 aaaagggtcttataattagggacggagggagtaca 4036124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 5375562 - 5375596
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  5375562 aaaagggtcttataattagggacggagggagtaca 5375596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 44294821 - 44294787
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  44294821 aaaagggtcttataattagggacggagggagtaca 44294787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 26866868 - 26866901
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||||||||||||| |||||    
T  26866868 aaaagggtcttataattaaggacggaggtagtac 26866901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33413550 - 33413517
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  33413550 aaaagggtcttataattagggacggagggagtac 33413517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37352576 - 37352547
Alignment:
Q  1 aaaagggtcttataattaaggacggaggga 30  Q
    ||||||||||||||||||||||||||||||    
T  37352576 aaaagggtcttataattaaggacggaggga 37352547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 37357475 - 37357446
Alignment:
Q  1 aaaagggtcttataattaaggacggaggga 30  Q
    ||||||||||||||||||||||||||||||    
T  37357475 aaaagggtcttataattaaggacggaggga 37357446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47228733 - 47228774
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| ||||||||| |||| ||||||||    
T  47228733 aaaagggtcttataattagggacggaggaagtaaaaaataaa 47228774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 375456 - 375424
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  375456 aaaagggtcttataattaaggacggaggtagta 375424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4035857 - 4035825
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4035857 aaaagggtcttataattagggacggagggagta 4035825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 4549661 - 4549629
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4549661 aaaagggtcttataattagggacggagggagta 4549629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 5743664 - 5743696
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  5743664 aaaagggtcttataattagggacggagggagta 5743696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20391442 - 20391474
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  20391442 aaaagggtcttataattagggacggagggagta 20391474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 20747435 - 20747467
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  20747435 aaaagggtcttataattagggacggagggagta 20747467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 25708451 - 25708419
Alignment:
Q  2 aaagggtcttataattaaggacggagggagtac 34  Q
    ||||||||||||||||| |||||||||||||||    
T  25708451 aaagggtcttataattagggacggagggagtac 25708419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 26626007 - 26626039
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  26626007 aaaagggtcttataattagggacggagggagta 26626039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 29014096 - 29014064
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  29014096 aaaagggtcttataattagggacggagggagta 29014064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30771560 - 30771528
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  30771560 aaaagggtcttataattagggacggagggagta 30771528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 32032998 - 32033030
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  32032998 aaaagggtcttataattagggacggagggagta 32033030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34273224 - 34273256
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34273224 aaaagggtcttataattagggacggagggagta 34273256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 35675925 - 35675957
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  35675925 aaaagggtcttataattagggacggagggagta 35675957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37776742 - 37776774
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  37776742 aaaagggtcttataattaaggacggaggtagta 37776774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45742811 - 45742843
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  45742811 aaaagggtcttataattagggacggagggagta 45742843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47806892 - 47806860
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  47806892 aaaagggtcttataattagggacggagggagta 47806860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52978014 - 52977982
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  52978014 aaaagggtcttataattagggacggagggagta 52977982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 53277190 - 53277222
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  53277190 aaaagggtcttataattagggacggagggagta 53277222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 55632031 - 55631999
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  55632031 aaaagggtcttataattagggacggagggagta 55631999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8841662 - 8841694
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  8841662 aaaagggtcttataattaaggacggagggagta 8841694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23789001 - 23788969
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||||||||    
T  23789001 aaaagggtcttataattaaggacggagggagta 23788969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7492109 - 7492142
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  7492109 aaaagggtcttataattagggacggagggagtac 7492142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36131033 - 36131066
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  36131033 aaaagggtcttataattagggacggagggagtac 36131066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2438257 - 2438225
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2438257 aaaagggtcttataattagggacggagggagta 2438225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2438490 - 2438522
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  2438490 aaaagggtcttataattagggacggagggagta 2438522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7491876 - 7491844
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  7491876 aaaagggtcttataattagggacggagggagta 7491844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 8716897 - 8716929
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  8716897 aaaagggtcttataattagggacggagggagta 8716929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9701102 - 9701070
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  9701102 aaaagggtcttataattaaggacggaggtagta 9701070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11201715 - 11201683
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  11201715 aaaagggtcttataattagggacggagggagta 11201683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15404712 - 15404744
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||| ||||||||||||||||||||    
T  15404712 aaaagggtcttacaattaaggacggagggagta 15404744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16108247 - 16108215
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  16108247 aaaagggtcttataattagggacggagggagta 16108215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16669658 - 16669626
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||| ||||||||||||    
T  16669658 aaaagggtcttataattaagaacggagggagta 16669626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 17408299 - 17408331
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  17408299 aaaagggtcttataattagggacggagggagta 17408331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 20252242 - 20252210
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  20252242 aaaagggtcttataattagggacggagggagta 20252210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22182929 - 22182961
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22182929 aaaagggtcttataattagggacggagggagta 22182961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 22897656 - 22897688
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22897656 aaaagggtcttataattagggacggagggagta 22897688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 27560238 - 27560206
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  27560238 aaaagggtcttataattagggacggagggagta 27560206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34062670 - 34062702
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34062670 aaaagggtcttataattagggacggagggagta 34062702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34113791 - 34113823
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34113791 aaaagggtcttataattagggacggagggagta 34113823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34883853 - 34883885
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34883853 aaaagggtcttataattagggacggagggagta 34883885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39833771 - 39833739
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39833771 aaaagggtcttataattagggacggagggagta 39833739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 40607734 - 40607702
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  40607734 aaaagggtcttataattagggacggagggagta 40607702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 41450548 - 41450516
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  41450548 aaaagggtcttataattagggacggagggagta 41450516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44573887 - 44573919
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  44573887 aaaagggtcttataattaaggacggaggtagta 44573919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45474383 - 45474351
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  45474383 aaaagggtcttataattagggacggagggagta 45474351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 23542244 - 23542278
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtaca 35  Q
    |||||||||||||||||| ||||||||||||||||    
T  23542244 aaaagggtcttataattagggacggagggagtaca 23542278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1039386 - 1039419
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  1039386 aaaagggtcttataattagggacggagggagtac 1039419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1046292 - 1046325
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  1046292 aaaagggtcttataattagggacggagggagtac 1046325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 39750153 - 39750116
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaa 38  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  39750153 aaaagggtcttataattagggacggagggagtataaaa 39750116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 943642 - 943674
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  943642 aaaagggtcttataattagggacggagggagta 943674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1048024 - 1047992
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  1048024 aaaagggtcttataattagggacggagggagta 1047992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 4102719 - 4102751
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  4102719 aaaagggtcttataattagggacggagggagta 4102751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9202277 - 9202245
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  9202277 aaaagggtcttataattagggacggagggagta 9202245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 11741429 - 11741397
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  11741429 aaaagggtcttataattagggacggagggagta 11741397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 15811237 - 15811269
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  15811237 aaaagggtcttataattagggacggagggagta 15811269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23530574 - 23530542
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  23530574 aaaagggtcttataattaaggacggaggtagta 23530542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 23542011 - 23541979
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  23542011 aaaagggtcttataattagggacggagggagta 23541979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 30290297 - 30290265
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  30290297 aaaagggtcttataattagggacggagggagta 30290265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36694886 - 36694854
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36694886 aaaagggtcttataattagggacggagggagta 36694854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 36710987 - 36710955
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  36710987 aaaagggtcttataattagggacggagggagta 36710955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 37951954 - 37951986
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  37951954 aaaagggtcttataattagggacggagggagta 37951986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38261372 - 38261340
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||||||||||||| ||||    
T  38261372 aaaagggtcttataattaaggacggaggtagta 38261340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 38920271 - 38920239
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  38920271 aaaagggtcttataattagggacggagggagta 38920239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39362966 - 39362934
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39362966 aaaagggtcttataattagggacggagggagta 39362934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39363199 - 39363231
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39363199 aaaagggtcttataattagggacggagggagta 39363231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 39497465 - 39497433
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39497465 aaaagggtcttataattagggacggagggagta 39497433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 39497698 - 39497730
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  39497698 aaaagggtcttataattagggacggagggagta 39497730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44646536 - 44646568
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  44646536 aaaagggtcttataattagggacggagggagta 44646568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 44649661 - 44649629
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  44649661 aaaagggtcttataattagggacggagggagta 44649629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 44649894 - 44649926
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  44649894 aaaagggtcttataattagggacggagggagta 44649926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 45039444 - 45039412
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  45039444 aaaagggtcttataattagggacggagggagta 45039412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 46075872 - 46075904
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  46075872 aaaagggtcttataattagggacggagggagta 46075904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 49907053 - 49907021
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  49907053 aaaagggtcttataattagggacggagggagta 49907021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 52431179 - 52431211
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  52431179 aaaagggtcttataattagggacggagggagta 52431211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 52602023 - 52601991
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  52602023 aaaagggtcttataattagggacggagggagta 52601991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0339 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0339
Description:

Target: scaffold0339; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 7145 - 7186
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| ||||||||| |||| ||||||||    
T  7145 aaaagggtcttataattagggacggaggaagtaaaaaataaa 7186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0122 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 12097 - 12056
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| |||||||||||||| || |||||    
T  12097 aaaagggtcttataattagggacggagggagtataagataaa 12056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 355336 - 355373
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaa 38  Q
    |||||||||||||||||| |||||||||||||| ||||    
T  355336 aaaagggtcttataattagggacggagggagtataaaa 355373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3028045 - 3028004
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| ||||||||| |||| ||||||||    
T  3028045 aaaagggtcttataattagggacggaggtagtataaaataaa 3028004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 4976295 - 4976336
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| ||||||||| ||||| |||||||    
T  4976295 aaaagggtcttataattagggacggaggtagtactaaataaa 4976336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9828425 - 9828392
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  9828425 aaaagggtcttataattagggacggagggagtac 9828392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9828658 - 9828691
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtac 34  Q
    |||||||||||||||||| |||||||||||||||    
T  9828658 aaaagggtcttataattagggacggagggagtac 9828691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 26894878 - 26894919
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagtacaaaataaa 42  Q
    |||||||||||||||||| |||||||||||||| || |||||    
T  26894878 aaaagggtcttataattagggacggagggagtataatataaa 26894919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 186363 - 186395
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  186363 aaaagggtcttataattagggacggagggagta 186395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 1265981 - 1265949
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  1265981 aaaagggtcttataattagggacggagggagta 1265949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 5528006 - 5527974
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||| ||||||||||||||||||||||||||||    
T  5528006 aaaaaggtcttataattaaggacggagggagta 5527974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6673233 - 6673265
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  6673233 aaaagggtcttataattagggacggagggagta 6673265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 7951594 - 7951562
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  7951594 aaaagggtcttataattagggacggagggagta 7951562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 9020726 - 9020694
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  9020726 aaaagggtcttataattagggacggagggagta 9020694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 10734528 - 10734560
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  10734528 aaaagggtcttataattagggacggagggagta 10734560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 14913680 - 14913648
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  14913680 aaaagggtcttataattagggacggagggagta 14913648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16127291 - 16127259
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  16127291 aaaagggtcttataattagggacggagggagta 16127259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 16440963 - 16440931
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  16440963 aaaagggtcttataattagggacggagggagta 16440931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 22527724 - 22527692
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  22527724 aaaagggtcttataattagggacggagggagta 22527692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 34662236 - 34662204
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  34662236 aaaagggtcttataattagggacggagggagta 34662204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 40004414 - 40004446
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  40004414 aaaagggtcttataattagggacggagggagta 40004446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0604 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0604
Description:

Target: scaffold0604; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 3787 - 3819
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  3787 aaaagggtcttataattagggacggagggagta 3819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 51687 - 51719
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  51687 aaaagggtcttataattagggacggagggagta 51719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 65410 - 65378
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  65410 aaaagggtcttataattagggacggagggagta 65378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 47672 - 47640
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  47672 aaaagggtcttataattagggacggagggagta 47640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 259127 - 259159
Alignment:
Q  1 aaaagggtcttataattaaggacggagggagta 33  Q
    |||||||||||||||||| ||||||||||||||    
T  259127 aaaagggtcttataattagggacggagggagta 259159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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