View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9766_high_5 (Length: 357)
Name: NF9766_high_5
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_high_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 13 - 342
Target Start/End: Complemental strand, 28691830 - 28691522
Alignment:
| Q |
13 |
gaacctgtggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagatttttatgccacccgtcctattaaaatcgacaatt |
112 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28691830 |
gaacctctggcctatttaggtatgctgcagtataatctgatgcacatggatcatatcctgctagatttttatgccacccgtcctattaaaattgacaatt |
28691731 |
T |
|
| Q |
113 |
tcaataggcaagtaactttagttgctgtagtatacgtgtactagtttttaagttctaaattgatgaattaactcaccagtaccaatttggaaaaagaaga |
212 |
Q |
| |
|
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
28691730 |
tcaataggcaagtaacgttagttgcagta------gtgtactagtttttaagttctaaattgatga---aactcaccagtaccaatttggaaa---aaga |
28691643 |
T |
|
| Q |
213 |
atgaggggcttcccttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtctataatcttatacacatcaaagtatttatta |
312 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
28691642 |
atga---------cttctgacgttgctgatattgctgaaacacatgggagcgtacaagctatacatgtctataatcttatacacatcgaagtatttatta |
28691552 |
T |
|
| Q |
313 |
agttctgtattgcattcatctgtttgattt |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28691551 |
agttctgtattgcattcatctgtttgattt |
28691522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University