View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9766_high_6 (Length: 356)
Name: NF9766_high_6
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 19 - 350
Target Start/End: Complemental strand, 3766626 - 3766295
Alignment:
| Q |
19 |
aatccgattgagttgtaactctcgattggttttctttttctagtcaagtgagcaattttaaagaatctattaaacaaccatatttttgttacgaagtatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3766626 |
aatccgattgagttgtaactctcgattggttttctttttccagtcaagtgagcaattttaaataatctattgaacaaccatatttttgttacgaagtatt |
3766527 |
T |
|
| Q |
119 |
tctcactgtccatttaatcaatatctaacttttcacattttcctttttgtatgttttcatataggctggaccagcaggaatcttttcacacaaagaggtc |
218 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3766526 |
tctcactgcccatttaatcaatatttaacttttcacattttcctttttgtatgttttcatataggctggaccagcaggaatcttttcacacaaagaggtc |
3766427 |
T |
|
| Q |
219 |
ttcacctctatacacaacaccataaaacaggtcttcaaatgtaagaatagatctacctcaaatcttttactagtacgtgtttgttagaaccggatcgaac |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3766426 |
ttcacctctatacacaacaccataaaacaggtcttcaaatgtaagaatagatctacctcaaatcttttactagtacgtgtttgttagaaccggatcgaac |
3766327 |
T |
|
| Q |
319 |
cgggttgaatttgttatttggttctctgcttc |
350 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| |
|
|
| T |
3766326 |
cgggttgaatttgttatttggttcactgcttc |
3766295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 267
Target Start/End: Complemental strand, 48388707 - 48388621
Alignment:
| Q |
181 |
aggctggaccagcaggaatcttttcacacaaagaggtcttcacctctatacacaacaccataaaacaggtcttcaaatgtaagaata |
267 |
Q |
| |
|
|||||||||| ||||| ||||| |||||| || |||||||| |||||| ||||||| || ||||| ||||| ||||||||||||| |
|
|
| T |
48388707 |
aggctggaccggcaggtatcttgacacacagggaagtcttcacttctatatacaacacaatcaaacaagtctttaaatgtaagaata |
48388621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University