View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_high_8 (Length: 281)
Name: NF9766_high_8
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 14 - 264
Target Start/End: Original strand, 42550061 - 42550308
Alignment:
| Q |
14 |
ggatatgagactccgttgctgggagaatgaattctttcaagtgggattttctccatttttctcaattgttacaaagaaccgaagaaaatatcttaattat |
113 |
Q |
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| T |
42550061 |
ggatatgagactccgttgctgggagaatgaattctttcaagtgggattttctccatttttctcaattgttataaagaaccgaagaaaatatcttaattat |
42550160 |
T |
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| Q |
114 |
tcattgnnnnnnnnnnnnnnnncacttacttctaccttcatttcaatcttatcatggttacg----gtttttattctaaacgcttcaattttaacacctt |
209 |
Q |
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| T |
42550161 |
tcatt-------aaaaaaaaaacacttaattctaccttcatttcaatcttatcatggttacgttttttttttattctaaacgcttcaattttaacacctt |
42550253 |
T |
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| Q |
210 |
tggttagaacatcaacaatctgattcacacttttgtaatcttccaacacatcttg |
264 |
Q |
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| T |
42550254 |
tggttagaacatcaacaatctgattcacacttttgtaatcttccaacacatcttg |
42550308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 86
Target Start/End: Original strand, 18373022 - 18373070
Alignment:
| Q |
38 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
86 |
Q |
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| T |
18373022 |
gaatgaattctttcaagtggaattttttccatttttctcaattgttaca |
18373070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 256
Target Start/End: Original strand, 15038919 - 15038989
Alignment:
| Q |
186 |
taaacgcttcaattttaacacctttggttagaacatcaacaatctgattcacacttttgtaatcttccaac |
256 |
Q |
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| T |
15038919 |
taaacacttcaatcttaacacctttggttagaacatctgcaatctgattctcacttttggaatgttccaac |
15038989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 30364394 - 30364346
Alignment:
| Q |
38 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
86 |
Q |
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| T |
30364394 |
gaatggattctctcaagtgaaattttctccatttttctcaattgttaca |
30364346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 6734492 - 6734443
Alignment:
| Q |
37 |
agaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
86 |
Q |
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| T |
6734492 |
agaatgtattcttttaagtggaattttctccatttttttcaattcttaca |
6734443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 15390390 - 15390342
Alignment:
| Q |
38 |
gaatgaattctttcaagtgggattttctccatttttctcaattgttaca |
86 |
Q |
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| T |
15390390 |
gaatggattctctcaagtataattttctccatttttctcaattgttaca |
15390342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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