View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9766_low_1 (Length: 493)

Name: NF9766_low_1
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9766_low_1
NF9766_low_1
[»] chr4 (24 HSPs)
chr4 (18-493)||(10164413-10164892)
chr4 (50-118)||(43093534-43093602)
chr4 (68-147)||(18513221-18513300)
chr4 (54-118)||(45615424-45615488)
chr4 (76-124)||(9988702-9988750)
chr4 (445-493)||(18513231-18513279)
chr4 (69-113)||(50216696-50216740)
chr4 (70-109)||(10517999-10518038)
chr4 (75-118)||(25400848-25400891)
chr4 (88-119)||(31901285-31901316)
chr4 (462-493)||(37496725-37496756)
chr4 (80-118)||(683064-683102)
chr4 (463-493)||(13307898-13307928)
chr4 (459-493)||(22799897-22799931)
chr4 (459-493)||(47492400-47492434)
chr4 (79-116)||(8457936-8457973)
chr4 (65-118)||(21732369-21732422)
chr4 (53-118)||(22596989-22597054)
chr4 (452-493)||(25400862-25400903)
chr4 (77-118)||(28890768-28890809)
chr4 (69-114)||(39439216-39439261)
chr4 (90-118)||(5075367-5075395)
chr4 (83-115)||(29388378-29388410)
chr4 (63-115)||(34093961-34094013)
[»] chr8 (15 HSPs)
chr8 (68-118)||(32691743-32691793)
chr8 (58-130)||(31681827-31681899)
chr8 (444-493)||(22600550-22600599)
chr8 (79-188)||(3066053-3066163)
chr8 (459-493)||(42874543-42874577)
chr8 (50-131)||(15140362-15140443)
chr8 (75-115)||(24758532-24758572)
chr8 (462-493)||(31119108-31119139)
chr8 (79-137)||(25161236-25161294)
chr8 (81-118)||(8917545-8917582)
chr8 (66-131)||(31548289-31548354)
chr8 (86-137)||(4337260-4337309)
chr8 (68-127)||(10002163-10002223)
chr8 (449-493)||(10497810-10497854)
chr8 (85-137)||(22600546-22600598)
[»] chr3 (8 HSPs)
chr3 (54-118)||(19323457-19323521)
chr3 (76-133)||(13290678-13290735)
chr3 (79-118)||(1502585-1502624)
chr3 (78-133)||(13164956-13165011)
chr3 (79-126)||(30367620-30367667)
chr3 (51-136)||(18267996-18268081)
chr3 (67-112)||(25074788-25074833)
chr3 (82-118)||(4946213-4946249)
[»] chr1 (18 HSPs)
chr1 (54-137)||(26777367-26777451)
chr1 (65-118)||(26462654-26462707)
chr1 (53-112)||(41500721-41500780)
chr1 (54-112)||(41510899-41510957)
chr1 (66-127)||(19637766-19637827)
chr1 (412-447)||(44126814-44126849)
chr1 (68-118)||(13709186-13709236)
chr1 (56-118)||(21057771-21057833)
chr1 (459-493)||(24462274-24462308)
chr1 (459-493)||(26390137-26390171)
chr1 (459-493)||(28170402-28170436)
chr1 (57-127)||(31667414-31667484)
chr1 (69-118)||(18556035-18556084)
chr1 (449-493)||(18946028-18946072)
chr1 (71-115)||(23605132-23605176)
chr1 (96-132)||(32638457-32638493)
chr1 (421-449)||(32638537-32638565)
chr1 (74-118)||(43609827-43609871)
[»] chr7 (18 HSPs)
chr7 (77-118)||(10893878-10893919)
chr7 (66-117)||(18750874-18750925)
chr7 (76-118)||(650527-650569)
chr7 (76-118)||(21238825-21238867)
chr7 (76-118)||(43160492-43160534)
chr7 (66-118)||(37775980-37776032)
chr7 (462-493)||(1885594-1885625)
chr7 (462-493)||(5937428-5937459)
chr7 (462-493)||(25956466-25956497)
chr7 (68-130)||(3095433-3095495)
chr7 (68-138)||(16341496-16341566)
chr7 (68-118)||(31924426-31924476)
chr7 (460-493)||(2144544-2144577)
chr7 (77-118)||(10893356-10893397)
chr7 (65-117)||(17930460-17930512)
chr7 (79-147)||(30737133-30737200)
chr7 (70-134)||(31808502-31808566)
chr7 (74-118)||(44172899-44172943)
[»] chr5 (15 HSPs)
chr5 (58-118)||(36611449-36611509)
chr5 (65-116)||(645329-645380)
chr5 (55-133)||(18592060-18592138)
chr5 (64-118)||(27239541-27239595)
chr5 (57-127)||(27718979-27719049)
chr5 (457-493)||(38784827-38784863)
chr5 (80-140)||(41558641-41558701)
chr5 (69-137)||(43208264-43208332)
chr5 (79-118)||(35129971-35130010)
chr5 (46-137)||(38749553-38749644)
chr5 (65-118)||(28296325-28296378)
chr5 (67-127)||(2577180-2577240)
chr5 (54-145)||(9878013-9878105)
chr5 (465-493)||(30080511-30080539)
chr5 (445-493)||(41558644-41558692)
[»] chr6 (19 HSPs)
chr6 (79-137)||(9024166-9024224)
chr6 (444-493)||(9024165-9024214)
chr6 (46-114)||(10760855-10760922)
chr6 (414-493)||(19369838-19369924)
chr6 (449-492)||(785449-785492)
chr6 (462-493)||(6751889-6751920)
chr6 (445-492)||(7942277-7942324)
chr6 (75-118)||(34057961-34058004)
chr6 (84-126)||(4343283-4343325)
chr6 (463-493)||(10031591-10031621)
chr6 (76-118)||(10335385-10335427)
chr6 (54-108)||(10421721-10421774)
chr6 (50-112)||(20662944-20663006)
chr6 (76-118)||(29449689-29449731)
chr6 (68-118)||(30537500-30537550)
chr6 (54-115)||(8623191-8623252)
chr6 (444-493)||(12696345-12696394)
chr6 (66-115)||(34625732-34625781)
chr6 (76-112)||(10522958-10522994)
[»] chr2 (12 HSPs)
chr2 (69-118)||(16630796-16630845)
chr2 (63-118)||(6626482-6626537)
chr2 (462-493)||(13501085-13501116)
chr2 (67-118)||(18622414-18622465)
chr2 (65-112)||(31026692-31026739)
chr2 (79-130)||(35198228-35198279)
chr2 (462-493)||(43586012-43586043)
chr2 (55-117)||(1119579-1119641)
chr2 (459-493)||(14450799-14450833)
chr2 (463-493)||(24067274-24067304)
chr2 (88-117)||(12933353-12933382)
chr2 (66-118)||(22131263-22131315)
[»] scaffold0002 (1 HSPs)
scaffold0002 (78-133)||(141977-142032)
[»] scaffold0110 (1 HSPs)
scaffold0110 (67-136)||(28849-28918)
[»] scaffold0022 (1 HSPs)
scaffold0022 (54-131)||(99879-99956)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 493
Target Start/End: Original strand, 10164413 - 10164892
Alignment:
Q  18 aaatcatatctttatagattcaccatccgaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 117  Q
    |||||||||||||||||||||||| |  |||||||| ||||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||| |    
T  10164413 aaatcatatctttatagattcaccctatgaagcactaacactgacatgtcaacaccggtagtaatttaagaaaatggcataattgaatgtaatcacattt 10164512  T
Q  118 gcccgtgtcgtgtcggacacagacatgtgtggacatcggacatgccattgatcagaagtgtcggtgctaca-aggatcattcaccgttgatattttcgaa 216  Q
     || ||||| ||||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||   |||||||||||||    
T  10164513 tccggtgtcttgtcggacaaagacatgcgtggacaccggacatgccattgattagaagtgtcggtgctatagaggatcattcacttgtgatattttcgaa 10164612  T
Q  217 aaagatcaaaacattgctaacagaataca--gaggggtaatctagtaacctatacacaaaaagagctctaagaaccgccatatacaaactaagccatcag 314  Q
    ||||||||||| |||  ||||| | ||||  |||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164613 aaagatcaaaatattattaacaaagtacacagaggggtaatctaaaaatctatacacaaaaagagctctaagaaccgccatatacaaactaagccatcag 10164712  T
Q  315 tttaatactctcagattactacatcaatcataaagaaaacaaggacatagatttgtct-atagtacaaacaaatatacacacatccttcttaattacaac 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | | ||| ||||||||||| ||||||||| |||||||||||    
T  10164713 tttaatactctcagattactacatcaatcataaagaaaacaaggatatagatttgtctcagattaccaacaaatatacgcacatccttattaattacaac 10164812  T
Q  414 ctctgttgcatcaacacttctaattgaaggcgtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10164813 ctctgttgcatcaacacttctaactgaaggcgtgtccgacactatactgacacttgtgattacattgaattatgtcattt 10164892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 43093602 - 43093534
Alignment:
Q  50 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||| | ||| ||||| ||| |||||| | |||||||||||||||||||||||||||||||    
T  43093602 cactgacactgacacgtcaacacccataataatttgaaaaaatggcataattgaatgtaatcacatgtg 43093534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 18513300 - 18513221
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt 147  Q
    |||||||||| |||||| |||||||| ||||||| |||||||||| ||||| | |||| ||||||||||| ||| |||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgtcggacaccgacgtgtgt 18513221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 45615488 - 45615424
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||| | |||| || |||| |||||||||||||||||| |||||||||| |||||||||||||    
T  45615488 gacactcacatgttgagaccggtagtaatttaagaaaatgacataattgaacgtaatcacatgtg 45615424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 124
Target Start/End: Complemental strand, 9988750 - 9988702
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtg 124  Q
    |||| |||| |||||||| |||||||||||||||||||||||| |||||    
T  9988750 tagttatttgagaaaatgacataattgaatgtaatcacatgtgtccgtg 9988702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 18513231 - 18513279
Alignment:
Q  445 gtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||| | |||||||| | ||||||||||||||||||||||||    
T  18513231 gtgtccgacacaacactgacacatatgattacattgaattatgtcattt 18513279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 50216740 - 50216696
Alignment:
Q  69 acaccgatagtaatttaagaaaatggcataattgaatgtaatcac 113  Q
    |||||| |||| ||||||||||||| |||||||||||||||||||    
T  50216740 acaccgttagtgatttaagaaaatgacataattgaatgtaatcac 50216696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 10518038 - 10517999
Alignment:
Q  70 caccgatagtaatttaagaaaatggcataattgaatgtaa 109  Q
    ||||| |||||||||||||||||| |||||||||||||||    
T  10518038 caccggtagtaatttaagaaaatgacataattgaatgtaa 10517999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 25400848 - 25400891
Alignment:
Q  75 atagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||||||||| ||||||| ||||| ||||||||||    
T  25400848 atagtaatttaagaaaatgacataattaaatgttatcacatgtg 25400891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 119
Target Start/End: Complemental strand, 31901316 - 31901285
Alignment:
Q  88 aaaatggcataattgaatgtaatcacatgtgc 119  Q
    ||||||||||||||||||||||||||||||||    
T  31901316 aaaatggcataattgaatgtaatcacatgtgc 31901285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 37496756 - 37496725
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  37496756 gacacttgtgattacattgaattatgtcattt 37496725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 80 - 118
Target Start/End: Original strand, 683064 - 683102
Alignment:
Q  80 aatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  683064 aatttgagaaaatgacataattgaatgtaatcacatgtg 683102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 463 - 493
Target Start/End: Complemental strand, 13307928 - 13307898
Alignment:
Q  463 acacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||||    
T  13307928 acacttgtgattacattgaattatgtcattt 13307898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 22799897 - 22799931
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||| ||||||||||||||||||||||||||    
T  22799897 actgacacgtgtgattacattgaattatgtcattt 22799931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Complemental strand, 47492434 - 47492400
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||| |||||||||||||    
T  47492434 actgacacttgtgattacattaaattatgtcattt 47492400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 8457936 - 8457973
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatg 116  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  8457936 taatttgagaaaatgacataattgaatgtaatcacatg 8457973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 21732422 - 21732369
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||| ||| ||||| | |||||| ||||||||| ||||||||||||||    
T  21732422 gtcgacaccggtaggaatttgaaaaaatgacataattgattgtaatcacatgtg 21732369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 53 - 118
Target Start/End: Complemental strand, 22597054 - 22596989
Alignment:
Q  53 tgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||| ||| || |||||||| ||| |||||| ||||||| |||||||| || |||||||||||||    
T  22597054 tgacaatgacatatcgacaccaataataatttgagaaaattgcataattcaacgtaatcacatgtg 22596989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 25400903 - 25400862
Alignment:
Q  452 acactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||| |||||| ||||| |||||||||||||    
T  25400903 acactatactgacacatgtgataacatttaattatgtcattt 25400862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Original strand, 28890768 - 28890809
Alignment:
Q  77 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||||||  |||||||||||| |||||||||||    
T  28890768 agtaatttaagaaaataacataattgaatgcaatcacatgtg 28890809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 114
Target Start/End: Original strand, 39439216 - 39439261
Alignment:
Q  69 acaccgatagtaatttaagaaaatggcataattgaatgtaatcaca 114  Q
    |||||| ||||||||||||||||||  | |||||||||||||||||    
T  39439216 acaccggtagtaatttaagaaaatgtaaaaattgaatgtaatcaca 39439261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 118
Target Start/End: Complemental strand, 5075395 - 5075367
Alignment:
Q  90 aatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||||||||||||||||||||    
T  5075395 aatggcataattgaatgtaatcacatgtg 5075367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 83 - 115
Target Start/End: Complemental strand, 29388410 - 29388378
Alignment:
Q  83 ttaagaaaatggcataattgaatgtaatcacat 115  Q
    ||||||||||| |||||||||||||||||||||    
T  29388410 ttaagaaaatgacataattgaatgtaatcacat 29388378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 34094013 - 34093961
Alignment:
Q  63 atgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 115  Q
    ||||||||| | ||| |||||| |||||||| |||||||||||| ||||||||    
T  34094013 atgtcgacaaccataataatttgagaaaatgtcataattgaatgcaatcacat 34093961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 32691743 - 32691793
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  32691743 gacaccggtagtaatttaagaaaatgacataattgaatgtaatcacatgtg 32691793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 58 - 130
Target Start/End: Complemental strand, 31681899 - 31681827
Alignment:
Q  58 ctgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 130  Q
    |||| ||||||||  || |||||||||||||||||| |||||||||||| ||||||||||| | |||||||||    
T  31681899 ctgacatgtcgacgtcgctagtaatttaagaaaatgacataattgaatgaaatcacatgtgtcggtgtcgtgt 31681827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 22600599 - 22600550
Alignment:
Q  444 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  22600599 cgtgtccgacacgatactggcacttgtgattatattgaattatgtcattt 22600550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 188
Target Start/End: Original strand, 3066053 - 3066163
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt-ggacatcggacatgccattgatcagaagtg 177  Q
    |||||| |||||||||  |||||||||||||| ||||||| | || ||||||| |  || |||||||||  |||| |||||||||| | ||||||| |||    
T  3066053 taatttgagaaaatggattaattgaatgtaataacatgtgtcggtatcgtgtcagggactgacatgtgtcagacaccggacatgccttagatcagaggtg 3066152  T
Q  178 tcggtgctaca 188  Q
    || ||||||||    
T  3066153 tcagtgctaca 3066163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 493
Target Start/End: Complemental strand, 42874577 - 42874543
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||||||||    
T  42874577 actgacacttgtgattacattgaattatgtcattt 42874543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 50 - 131
Target Start/End: Complemental strand, 15140443 - 15140362
Alignment:
Q  50 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 131  Q
    |||||||| ||| ||||| |||||| ||||||||| ||||| | | |||||||||||||| |||| ||| | ||||||||||    
T  15140443 cactgacattgacatgtcaacaccggtagtaatttgagaaatttgaataattgaatgtaaccacacgtgtcggtgtcgtgtc 15140362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 24758572 - 24758532
Alignment:
Q  75 atagtaatttaagaaaatggcataattgaatgtaatcacat 115  Q
    ||||||||||||||||||| ||||||||||| |||||||||    
T  24758572 atagtaatttaagaaaatgacataattgaatataatcacat 24758532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 31119139 - 31119108
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  31119139 gacacttgtgattacattgaattatgtcattt 31119108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 25161236 - 25161294
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||| | ||||||| |||||||||||| |||||||||| | |||||||||| |||||    
T  25161236 taatttgaaaaaatggtataattgaatgtcatcacatgtgtcagtgtcgtgtcagacac 25161294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 81 - 118
Target Start/End: Complemental strand, 8917582 - 8917545
Alignment:
Q  81 atttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||| |||||||||||||||||| |||||    
T  8917582 atttaagaaaatgacataattgaatgtaatcagatgtg 8917545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 131
Target Start/End: Complemental strand, 31548354 - 31548289
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 131  Q
    |||||||||||| | |||| | |||||| ||||||| |||||||||||||||| | ||||| ||||    
T  31548354 tcgacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtcggtgtcatgtc 31548289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 4337260 - 4337309
Alignment:
Q  86 agaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||||  |||||||||||||||||||||||  ||||||||||| ||||||    
T  4337260 agaaaatttcataattgaatgtaatcacatgt--ccgtgtcgtgttggacac 4337309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 68 - 127
Target Start/End: Complemental strand, 10002223 - 10002163
Alignment:
Q  68 gacaccgatagtaattt-aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 127  Q
    |||||||||| |||||| || |||||| ||||||| |||||||||||||||| | ||||||    
T  10002223 gacaccgataataatttgaaaaaaatgacataatttaatgtaatcacatgtgtcggtgtcg 10002163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 10497810 - 10497854
Alignment:
Q  449 ccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||| ||||||||||||||||||||||  |||||||| ||||    
T  10497810 ccgacacgatactgacacttgtgattacatcaaattatgttattt 10497854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 137
Target Start/End: Original strand, 22600546 - 22600598
Alignment:
Q  85 aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    ||||||||| ||||||| ||| |||||||| ||||| || |||||||||||||    
T  22600546 aagaaaatgacataattcaatataatcacaagtgccagtatcgtgtcggacac 22600598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 19323521 - 19323457
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||| | |||||||||| ||||||||||| |||||||| ||||||||||| ||||||||||||    
T  19323521 gacactaacatgtcgacactgatagtaatttgagaaaatgacataattgaatttaatcacatgtg 19323457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 76 - 133
Target Start/End: Original strand, 13290678 - 13290735
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 133  Q
    |||||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  13290678 tagtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13290735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Original strand, 1502585 - 1502624
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||| |||||||||| ||||||||||||||||||||||||    
T  1502585 taatctaagaaaatgacataattgaatgtaatcacatgtg 1502624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Original strand, 13164956 - 13165011
Alignment:
Q  78 gtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 133  Q
    |||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  13164956 gtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 13165011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 126
Target Start/End: Complemental strand, 30367667 - 30367620
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtc 126  Q
    ||||||||||||||| |||||||||||||||||| ||||  |||||||    
T  30367667 taatttaagaaaatgacataattgaatgtaatcaaatgtttccgtgtc 30367620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 136
Target Start/End: Complemental strand, 18268081 - 18267996
Alignment:
Q  51 actgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggaca 136  Q
    ||||| ||||| ||||| |||| |||| |||||| ||||||||   |||||||| ||||||||||||| | |||| |||| |||||    
T  18268081 actgaaactgacatgtcaacactgataataatttgagaaaatgaattaattgaacgtaatcacatgtgtcggtgttgtgttggaca 18267996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 25074788 - 25074833
Alignment:
Q  67 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    ||||||||||| |||||| |||||||| ||||||||| ||||||||    
T  25074788 cgacaccgataataatttgagaaaatgacataattgagtgtaatca 25074833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 4946249 - 4946213
Alignment:
Q  82 tttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||  |||||||||||||||||||||||    
T  4946249 tttaagaaaatgatataattgaatgtaatcacatgtg 4946213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 54 - 137
Target Start/End: Complemental strand, 26777451 - 26777367
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaattt-aagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||||||| ||| ||||||||| |||||| || |||||| | ||||||||||||||||||||||   ||||||||||||||||    
T  26777451 gacactgagaagtcaacaccgataataatttgaaaaaaatgacttaattgaatgtaatcacatgtgtgggtgtcgtgtcggacac 26777367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 118
Target Start/End: Complemental strand, 26462707 - 26462654
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||| |||| |||||||||||||||  |||||||||||||||||||||||    
T  26462707 gtcgacactgataataatttaagaaaatgaaataattgaatgtaatcacatgtg 26462654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 41500780 - 41500721
Alignment:
Q  53 tgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    ||||||||| |||| ||||||  ||||||||||||||||||  |||||||||||||||||    
T  41500780 tgacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaatca 41500721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 54 - 112
Target Start/End: Complemental strand, 41510957 - 41510899
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    |||||||| |||| ||||||  ||||||||||||||||||  |||||||||||||||||    
T  41510957 gacactgacatgttgacaccactagtaatttaagaaaatgatataattgaatgtaatca 41510899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 19637766 - 19637827
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 127  Q
    |||||||||||| ||||||||||||||| ||| ||| |||||||||| ||||| | ||||||    
T  19637766 tcgacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcg 19637827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 447
Target Start/End: Original strand, 44126814 - 44126849
Alignment:
Q  412 acctctgttgcatcaacacttctaattgaaggcgtg 447  Q
    |||||||||||| |||||||||||||||||||||||    
T  44126814 acctctgttgcaccaacacttctaattgaaggcgtg 44126849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 13709186 - 13709236
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||| |||||| ||||||||||||| || ||||||||||||||| |||||    
T  13709186 gacactgatagtgatttaagaaaatgacaaaattgaatgtaatcagatgtg 13709236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 56 - 118
Target Start/End: Original strand, 21057771 - 21057833
Alignment:
Q  56 cactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||| | |||||||||| || |||||| |||||||  ||||||||||||||||| ||||||    
T  21057771 cactgacacgtcgacaccgctaataattttagaaaataacataattgaatgtaatcgcatgtg 21057833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 24462274 - 24462308
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    ||||| |||||||||||||||||||||||||||||    
T  24462274 actgaaacttgtgattacattgaattatgtcattt 24462308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 26390137 - 26390171
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||| |||||||||||||    
T  26390137 actgacacttgtgattacattcaattatgtcattt 26390171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Complemental strand, 28170436 - 28170402
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||| ||||||||||||||||||||||    
T  28170436 actgacacttgttattacattgaattatgtcattt 28170402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 57 - 127
Target Start/End: Original strand, 31667414 - 31667484
Alignment:
Q  57 actgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 127  Q
    ||||| ||||| |||| | || |||||| |||||||| ||||||| |||||||||||||||| | ||||||    
T  31667414 actgacatgtcaacactggtaataattttagaaaatgacataattaaatgtaatcacatgtgtcggtgtcg 31667484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 18556084 - 18556035
Alignment:
Q  69 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||| || |||||||| |||||| ||||||||| ||||||||||||||    
T  18556084 acaccggtaataatttaataaaatgacataattgactgtaatcacatgtg 18556035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 449 - 493
Target Start/End: Original strand, 18946028 - 18946072
Alignment:
Q  449 ccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    |||||| || ||| ||||| |||||||||||||||||||||||||    
T  18946028 ccgacaatacactcacactcgtgattacattgaattatgtcattt 18946072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 71 - 115
Target Start/End: Complemental strand, 23605176 - 23605132
Alignment:
Q  71 accgatagtaatttaagaaaatggcataattgaatgtaatcacat 115  Q
    |||||||||||||| |||||||  || ||||||||||||||||||    
T  23605176 accgatagtaatttgagaaaataacaaaattgaatgtaatcacat 23605132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 132
Target Start/End: Original strand, 32638457 - 32638493
Alignment:
Q  96 ataattgaatgtaatcacatgtgcccgtgtcgtgtcg 132  Q
    ||||||||||||||||||||||| | |||||||||||    
T  32638457 ataattgaatgtaatcacatgtgtcagtgtcgtgtcg 32638493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 421 - 449
Target Start/End: Complemental strand, 32638565 - 32638537
Alignment:
Q  421 gcatcaacacttctaattgaaggcgtgtc 449  Q
    |||||||||||||||||||||||||||||    
T  32638565 gcatcaacacttctaattgaaggcgtgtc 32638537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 43609871 - 43609827
Alignment:
Q  74 gatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||| |||||| |||||||  ||||||||||||||||||||||||    
T  43609871 gataataatttgagaaaataacataattgaatgtaatcacatgtg 43609827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 10893919 - 10893878
Alignment:
Q  77 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  10893919 agtaatttaagaaaatgacataattgaatgtaatcacatgtg 10893878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 66 - 117
Target Start/End: Original strand, 18750874 - 18750925
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 117  Q
    |||||| || || ||||||||||||||| |||||||||||||||||||||||    
T  18750874 tcgacaacggtaataatttaagaaaatgacataattgaatgtaatcacatgt 18750925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 650527 - 650569
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||||||||| |||||||||||| |||||||||||    
T  650527 tagtaatttaagaaaatgacataattgaatgcaatcacatgtg 650569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 21238825 - 21238867
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||||||||| || |||||||||||||||||||||    
T  21238825 tagtaatttaagaaaatgtcaaaattgaatgtaatcacatgtg 21238867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 43160492 - 43160534
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||||||||  ||||||||||||||||||||||||    
T  43160492 tagtaatttaagaaaataacataattgaatgtaatcacatgtg 43160534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 37775980 - 37776032
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||  ||||||||| |||||||| ||||||| ||||||||||||||||    
T  37775980 tcgacaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtg 37776032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 1885625 - 1885594
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  1885625 gacacttgtgattacattgaattatgtcattt 1885594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Original strand, 5937428 - 5937459
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  5937428 gacacttgtgattacattgaattatgtcattt 5937459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Complemental strand, 25956497 - 25956466
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  25956497 gacacttgtgattacattgaattatgtcattt 25956466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 3095433 - 3095495
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 130  Q
    ||||| ||||||||||||| ||||||||||| |||||| |||||| || || | |||||||||    
T  3095433 gacacggatagtaatttaaaaaaatggcatatttgaatataatcatatatgtcggtgtcgtgt 3095495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 138
Target Start/End: Original strand, 16341496 - 16341566
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacaca 138  Q
    ||||| |||| |||||| |||||||  ||||||| | |||||| | ||||||| |||||||||||||||||    
T  16341496 gacactgataataatttgagaaaatcacataattaagtgtaattatatgtgccggtgtcgtgtcggacaca 16341566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 31924426 - 31924476
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||| |||||||||||||| | | |||||||| ||||||||||||    
T  31924426 gacaccgataataatttaagaaaatagaacaattgaatataatcacatgtg 31924476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 460 - 493
Target Start/End: Original strand, 2144544 - 2144577
Alignment:
Q  460 ctgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||| ||||||||||||||||||||||||||    
T  2144544 ctgacacgtgtgattacattgaattatgtcattt 2144577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 118
Target Start/End: Complemental strand, 10893397 - 10893356
Alignment:
Q  77 agtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||| |||||||| ||||||||||||||||| ||||||    
T  10893397 agtaatttgagaaaatgacataattgaatgtaatcgcatgtg 10893356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 117
Target Start/End: Original strand, 17930460 - 17930512
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 117  Q
    ||||||||| ||| ||||||||||||||| ||| ||| ||||| |||||||||    
T  17930460 gtcgacaccaatactaatttaagaaaatgacatcattcaatgtcatcacatgt 17930512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 30737200 - 30737133
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacagacatgtgt 147  Q
    ||||||||||||||| ||||| ||||||||||| |||||| |  ||| ||||||||||  |||||||||    
T  30737200 taatttaagaaaatgacataactgaatgtaatc-catgtgtcattgttgtgtcggacatggacatgtgt 30737133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 134
Target Start/End: Complemental strand, 31808566 - 31808502
Alignment:
Q  70 caccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgga 134  Q
    |||||||| |||||| |||||||| || || | ||||||||||||||||   |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtcgtgtcgga 31808502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 44172943 - 44172899
Alignment:
Q  74 gatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||| |||||| |||||||| ||||||| ||||||||||||||||    
T  44172943 gataataatttgagaaaatgacataattcaatgtaatcacatgtg 44172899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 118
Target Start/End: Original strand, 36611449 - 36611509
Alignment:
Q  58 ctgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||| |||| ||||||||||||| |||||||||||| |||||||||| ||||| |||||||    
T  36611449 ctgacatgttgacaccgatagtagtttaagaaaatgacataattgaacgtaatgacatgtg 36611509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 65 - 116
Target Start/End: Original strand, 645329 - 645380
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatg 116  Q
    ||||| || ||| |||||||||||||||| ||||||||||||||||||||||    
T  645329 gtcgatactgatggtaatttaagaaaatgacataattgaatgtaatcacatg 645380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 18592060 - 18592138
Alignment:
Q  55 acactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 133  Q
    ||||||| ||| |||||||| || || |||||||||||  ||||||| |||||||| | ||||||| ||||||||||||    
T  18592060 acactgatatgccgacaccgctaatattttaagaaaattacataattcaatgtaattatatgtgccggtgtcgtgtcgg 18592138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 118
Target Start/End: Original strand, 27239541 - 27239595
Alignment:
Q  64 tgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||| ||||| |||||||  ||||||||| |||||||||||||||||||||||||    
T  27239541 tgtcaacacctatagtaacgtaagaaaattgcataattgaatgtaatcacatgtg 27239595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 127
Target Start/End: Complemental strand, 27719049 - 27718979
Alignment:
Q  57 actgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 127  Q
    ||||| |||||||||||  |||||||||||||||| |||| |||||||  |||||||||||| | ||||||    
T  27719049 actgacatgtcgacaccagtagtaatttaagaaaacggcaaaattgaacataatcacatgtgtcggtgtcg 27718979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 457 - 493
Target Start/End: Complemental strand, 38784863 - 38784827
Alignment:
Q  457 atactgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||| ||||||    
T  38784863 atactgacacttgtgattacattgaattatatcattt 38784827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 80 - 140
Target Start/End: Complemental strand, 41558701 - 41558641
Alignment:
Q  80 aatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacacaga 140  Q
    ||||| |||||||| ||||||| |||||||| | ||||| | |||||||||||||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgtcggacacaga 41558641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 43208332 - 43208264
Alignment:
Q  69 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||||||||||||| |||||||| ||||||| |||||||||| || || | |||| ||||| |||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaatcatatctgtctgtgttgtgtcagacac 43208264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 118
Target Start/End: Complemental strand, 35130010 - 35129971
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||||||||||||||||||  ||||||||||    
T  35130010 taatttaagaaaatggcataattgaatgagatcacatgtg 35129971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 38749644 - 38749553
Alignment:
Q  46 gaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||||  |||| || ||||||||||||||| |||||| | |||||| ||||||| |||||||| | |||||   |||| |||||||||||    
T  38749644 gaagcacaaacacggacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacac 38749553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 65 - 118
Target Start/End: Original strand, 28296325 - 28296378
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||||||| |||||| |||||||| ||||||| |||||| ||| |||||    
T  28296325 gtcgacaccgataataatttgagaaaatgacataattcaatgtactcatatgtg 28296378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 2577240 - 2577180
Alignment:
Q  67 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcg 127  Q
    ||||||||||| |||||| |||||||| ||||||| | |||||||| |||| || ||||||    
T  2577240 cgacaccgataataatttgagaaaatgacataatttagtgtaatcatatgttccggtgtcg 2577180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 54 - 145
Target Start/End: Complemental strand, 9878105 - 9878013
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac-agacatgt 145  Q
    |||||||| | ||||||||| ||| |||||| |||| |||   ||||||||||||||||| |||| | ||| | |||||||||| ||||||||    
T  9878105 gacactgacacgtcgacaccaataataatttgagaatatgaattaattgaatgtaatcacttgtgtcagtgccatgtcggacactagacatgt 9878013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 465 - 493
Target Start/End: Original strand, 30080511 - 30080539
Alignment:
Q  465 acttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||    
T  30080511 acttgtgattacattgaattatgtcattt 30080539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 445 - 493
Target Start/End: Original strand, 41558644 - 41558692
Alignment:
Q  445 gtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||| | |||||||| | | ||||||||||||||||||||||    
T  41558644 gtgtccgacacgacactgacacatttaattacattgaattatgtcattt 41558692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Complemental strand, 9024224 - 9024166
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggacac 137  Q
    |||||| |||||||| ||||||| |||||||||| ||||| | ||||||||||||||||    
T  9024224 taatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgtcggacac 9024166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 444 - 493
Target Start/End: Original strand, 9024165 - 9024214
Alignment:
Q  444 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||| | |||||||| | ||||||||||||||||||||||||    
T  9024165 cgtgtccgacacgacactgacacatatgattacattgaattatgtcattt 9024214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 10760922 - 10760855
Alignment:
Q  46 gaagcactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcaca 114  Q
    ||||||| |||||||| | |||||||| |||| |||||| |||||||| |||| |||||||||||||||    
T  10760922 gaagcacggacactgacacgtcgacactgataataatttgagaaaatgacata-ttgaatgtaatcaca 10760855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 414 - 493
Target Start/End: Complemental strand, 19369924 - 19369838
Alignment:
Q  414 ctctgttgcatcaacacttctaattgaaggcgtgtc-------cgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||   |||||||| ||||||||||||||       |||||| | || ||||||||||||||||||||||||||||||||    
T  19369924 ctctgttgcacggacacttctgattgaaggcgtgtctcggtgtcgacacgacaccgacacttgtgattacattgaattatgtcattt 19369838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 449 - 492
Target Start/End: Original strand, 785449 - 785492
Alignment:
Q  449 ccgacactatactgacacttgtgattacattgaattatgtcatt 492  Q
    ||||||| | || |||||||||||||||||||||||||||||||    
T  785449 ccgacacgacaccgacacttgtgattacattgaattatgtcatt 785492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Original strand, 6751889 - 6751920
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  6751889 gacacttgtgattacattgaattatgtcattt 6751920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 492
Target Start/End: Complemental strand, 7942324 - 7942277
Alignment:
Q  445 gtgtccgacactatactgacacttgtgattacattgaattatgtcatt 492  Q
    |||||||||||   |||||||| |||||||||||||||||||||||||    
T  7942324 gtgtccgacacagcactgacacatgtgattacattgaattatgtcatt 7942277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 118
Target Start/End: Original strand, 34057961 - 34058004
Alignment:
Q  75 atagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||| |||||||||| ||||||||| ||||||||||||||    
T  34057961 atagtaatataagaaaatgacataattgactgtaatcacatgtg 34058004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 126
Target Start/End: Original strand, 4343283 - 4343325
Alignment:
Q  84 taagaaaatggcataattgaatgtaatcacatgtgcccgtgtc 126  Q
    |||||||||| ||||||||||||||||||||| |||| |||||    
T  4343283 taagaaaatgacataattgaatgtaatcacatatgccagtgtc 4343325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 463 - 493
Target Start/End: Complemental strand, 10031621 - 10031591
Alignment:
Q  463 acacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||||    
T  10031621 acacttgtgattacattgaattatgtcattt 10031591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Complemental strand, 10335427 - 10335385
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||| |||||||| |||||||||||||||||| |||||    
T  10335427 tagtaatttgagaaaatgacataattgaatgtaatcagatgtg 10335385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 54 - 108
Target Start/End: Original strand, 10421721 - 10421774
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgta 108  Q
    |||||||| | ||||||||| |||||| |||||||||||| ||||||||||||||    
T  10421721 gacactgacacgtcgacacc-atagtattttaagaaaatgacataattgaatgta 10421774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 20662944 - 20663006
Alignment:
Q  50 cactgacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    |||| ||||||| |||||||||||  || || |||||| ||||| ||||||||||||||||||    
T  20662944 cactcacactgacatgtcgacaccattactagtttaagcaaatgacataattgaatgtaatca 20663006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 76 - 118
Target Start/End: Original strand, 29449689 - 29449731
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||| |||||||  ||||||||||||||||||||||||    
T  29449689 tagtaatttcagaaaataacataattgaatgtaatcacatgtg 29449731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 30537500 - 30537550
Alignment:
Q  68 gacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||| |||||||||||||||||  ||||||||||||| |||| |||||    
T  30537500 gacaccgttagtaatttaagaaaataacataattgaatgttatcagatgtg 30537550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 8623191 - 8623252
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 115  Q
    |||||||| | || ||||||||||  ||||| |||||||| ||| |||||||||||||||||    
T  8623191 gacactgacacgttgacaccgataacaattttagaaaatgacatcattgaatgtaatcacat 8623252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 444 - 493
Target Start/End: Complemental strand, 12696394 - 12696345
Alignment:
Q  444 cgtgtccgacactatactgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||| | |||||||||||| |||||| |||||||||| ||||    
T  12696394 cgtgtccgacacgacactgacacttgtaattacactgaattatgtaattt 12696345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 34625732 - 34625781
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacat 115  Q
    |||||||||||| |||||| ||||||||   |||||||||||||||||||    
T  34625732 tcgacaccgataataatttgagaaaatgaattaattgaatgtaatcacat 34625781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 76 - 112
Target Start/End: Complemental strand, 10522994 - 10522958
Alignment:
Q  76 tagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  10522994 tagtaatttaagaaaatgacataattgaatataatca 10522958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 16630796 - 16630845
Alignment:
Q  69 acaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtg 16630845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 63 - 118
Target Start/End: Complemental strand, 6626537 - 6626482
Alignment:
Q  63 atgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    |||||||||||| ||  ||||||||||| || ||||||||||||||||| ||||||    
T  6626537 atgtcgacaccggtataaatttaagaaagtgtcataattgaatgtaatcgcatgtg 6626482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Original strand, 13501085 - 13501116
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  13501085 gacacttgtgattacattgaattatgtcattt 13501116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 18622414 - 18622465
Alignment:
Q  67 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||| ||||| ||||||||||||||| ||||||| |||| |||||||||||    
T  18622414 cgacatcgataataatttaagaaaatgacataattaaatgcaatcacatgtg 18622465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 112
Target Start/End: Original strand, 31026692 - 31026739
Alignment:
Q  65 gtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatca 112  Q
    ||||| ||||||| ||||||||||||||| ||||||| ||||||||||    
T  31026692 gtcgagaccgataataatttaagaaaatgacataattcaatgtaatca 31026739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 35198279 - 35198228
Alignment:
Q  79 taatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgt 130  Q
    |||||||||||||||   |||||||||||||||||||||| | |||||||||    
T  35198279 taatttaagaaaatgaattaattgaatgtaatcacatgtgacggtgtcgtgt 35198228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 462 - 493
Target Start/End: Original strand, 43586012 - 43586043
Alignment:
Q  462 gacacttgtgattacattgaattatgtcattt 493  Q
    ||||||||||||||||||||||||||||||||    
T  43586012 gacacttgtgattacattgaattatgtcattt 43586043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 1119641 - 1119579
Alignment:
Q  55 acactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgt 117  Q
    ||||||| |||||||||||| |  | |||||||||||||  ||||||||||||| ||||||||    
T  1119641 acactgacatgtcgacaccggtgatgatttaagaaaatgatataattgaatgtagtcacatgt 1119579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 459 - 493
Target Start/End: Original strand, 14450799 - 14450833
Alignment:
Q  459 actgacacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||| ||||    
T  14450799 actgacacttgtgattacattgaattatgtgattt 14450833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 463 - 493
Target Start/End: Complemental strand, 24067304 - 24067274
Alignment:
Q  463 acacttgtgattacattgaattatgtcattt 493  Q
    |||||||||||||||||||||||||||||||    
T  24067304 acacttgtgattacattgaattatgtcattt 24067274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 117
Target Start/End: Complemental strand, 12933382 - 12933353
Alignment:
Q  88 aaaatggcataattgaatgtaatcacatgt 117  Q
    ||||||||||||||||||||||||||||||    
T  12933382 aaaatggcataattgaatgtaatcacatgt 12933353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 118
Target Start/End: Complemental strand, 22131315 - 22131263
Alignment:
Q  66 tcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtg 118  Q
    ||||||| ||||||||||| |||||||| |||  || ||||||||||||||||    
T  22131315 tcgacactgatagtaatttgagaaaatgacattgttcaatgtaatcacatgtg 22131263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 78 - 133
Target Start/End: Complemental strand, 142032 - 141977
Alignment:
Q  78 gtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcgg 133  Q
    |||| ||||||||||| ||||||| || ||||||||||||| | ||||||||||||    
T  142032 gtaacttaagaaaatgacataattaaaagtaatcacatgtgtcagtgtcgtgtcgg 141977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 28849 - 28918
Alignment:
Q  67 cgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtcggaca 136  Q
    |||||||| || |||||||||||||| |||||||| |||||||| | ||||| | |||| ||||| ||||    
T  28849 cgacaccgttaataatttaagaaaatcgcataattcaatgtaattatatgtgtcggtgttgtgtcagaca 28918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 99879 - 99956
Alignment:
Q  54 gacactgagatgtcgacaccgatagtaatttaagaaaatggcataattgaatgtaatcacatgtgcccgtgtcgtgtc 131  Q
    ||||| || ||||||||||||||| |||||| |||||||  ||||||| |||||||| | |||||   ||||||||||    
T  99879 gacacggacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtcgtgtc 99956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University