View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_13 (Length: 330)
Name: NF9766_low_13
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 12815226 - 12815379
Alignment:
| Q |
13 |
gagagatttaataaaaatattatcgaaaaacgactcataccttgatcagaaataaggatcaacagtctataaagaacaaccacatttagtttctatgttg |
112 |
Q |
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| T |
12815226 |
gagagatttaataaaaatattattgaaaaacgactcataccttgatcagaaataaggatcaacagtctataaagaactaccacatttagtttctatgatg |
12815325 |
T |
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| Q |
113 |
atatttttgtaggataaaatcatacataaattcaaattctaagaatattgaact |
166 |
Q |
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| T |
12815326 |
atatttttgtaggataaaatcatacataaattcaaattctaagaatattgaact |
12815379 |
T |
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Target: chr8; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 232 - 313
Target Start/End: Original strand, 12815445 - 12815526
Alignment:
| Q |
232 |
ttcgataaacatgaaaggaaaagtagaacaacacatttatatcttacaaacgaatctatttcaatcatactagcaacatcaa |
313 |
Q |
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| T |
12815445 |
ttcgatagacatgaaaggaaaagtagaacaacacatttatatcttacaaacgaatctgtttcaatcatactagcaacatcaa |
12815526 |
T |
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