View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_14 (Length: 322)
Name: NF9766_low_14
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 306
Target Start/End: Complemental strand, 38299945 - 38299663
Alignment:
| Q |
24 |
accattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtca |
123 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299945 |
accattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtca |
38299846 |
T |
|
| Q |
124 |
aacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctc |
223 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38299845 |
aacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctc |
38299746 |
T |
|
| Q |
224 |
ttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacataaccactccatgatgt |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
38299745 |
ttcagtgtacaaatcctcaaaataaagctcgacaacgtcaggaggaggcaaaacaatatcttgacttaaccattccatgatgt |
38299663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 24 - 225
Target Start/End: Complemental strand, 38305864 - 38305663
Alignment:
| Q |
24 |
accattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtca |
123 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
38305864 |
accattctctcacacatctcggctacagtgggtaaaacaacacagaagttgagaaccttactatttaacttccaatccgcgtcaacaaaatgcgcagtca |
38305765 |
T |
|
| Q |
124 |
aacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctc |
223 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| | |||||||| || |||||||| |
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| T |
38305764 |
aacagatataagtctcagcagtgttagattcccacaaatcaaaagttaaagatatcctattaggaatggtagccaattcttgtttaagcttcagtttctc |
38305665 |
T |
|
| Q |
224 |
tt |
225 |
Q |
| |
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|| |
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|
| T |
38305664 |
tt |
38305663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 58 - 237
Target Start/End: Complemental strand, 38316558 - 38316379
Alignment:
| Q |
58 |
aaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccca |
157 |
Q |
| |
|
||||||||| || || |||||||||||||| |||||||||| |||||||||||||||||| |||||||| ||||||||||||| |||||||||||||| |
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| T |
38316558 |
aaacaagacgaaagttgagaaccttactattcaacttccaattcgcgtcaacaaaatgagctgtcaaacaaatataagtctcagtggtgttagattccca |
38316459 |
T |
|
| Q |
158 |
cagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
237 |
Q |
| |
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|| |||||||||||||||||||||||||||||| |||||| | |||||||| || |||||||||| |||||||||| |
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| T |
38316458 |
caaatcaaaagttaaagatatcctattaggaatgctagccaattcttgtttaagctttagtttctctttcgtgtacaaat |
38316379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 24 - 239
Target Start/End: Complemental strand, 38320690 - 38320475
Alignment:
| Q |
24 |
accattctctcacacatctcagatacagtgggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtca |
123 |
Q |
| |
|
|||||||||||||||||||||| | ||||||| |||| |||||| | ||||||||||| ||||| ||||||| ||||||| ||||||||||||||| |
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| T |
38320690 |
accattctctcacacatctcagctccagtgggatcaacagtacagaaggtgagaaccttactctttaatttccaattcgcgtcagcaaaatgagcggtca |
38320591 |
T |
|
| Q |
124 |
aacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctc |
223 |
Q |
| |
|
|||| ||||||||||| | |||| |||||||||||||||| |||||||||||||||||||||||| ||||||| | ||||||| ||||||||| | |
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| T |
38320590 |
aacaaatataagtctcggtagtgcatgattcccacagatcaacagttaaagatatcctattaggaatggtagccaaatcctgtttaagcttgagtttcgc |
38320491 |
T |
|
| Q |
224 |
ttcagtgtacaaatcc |
239 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
38320490 |
tttcgtgtacaaatcc |
38320475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 38313186 - 38313023
Alignment:
| Q |
24 |
accattctctcacacatctcagatacagt----gggtaaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcg |
119 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||| ||||||||||||| || ||||| ||||||||||||||||||| ||| ||||| |||||||| |
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| T |
38313186 |
accattctctcacacatctcagctccagtaggagggt-aaacaagacagaagttgagaactttactatttaacttccaattcgcatcaacgaaatgagca |
38313088 |
T |
|
| Q |
120 |
gtcaaacagatataagtctcagcagtgttagattcccacagatcaaaagttaaagatatcctatt |
184 |
Q |
| |
|
|||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |
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|
| T |
38313087 |
gtcaaacaaatataagtctcagtagtattagattcccacaaatcaaaagttaaagatatcctatt |
38313023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 65 - 210
Target Start/End: Complemental strand, 38325396 - 38325251
Alignment:
| Q |
65 |
acagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattcccacagatca |
164 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||| ||| || |||| | || |||| ||||||||||| |||| |
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| T |
38325396 |
acagaaattgagaaccttactatttaccttccaattcgcgtcaacaaaatgagcggtcagacaaatgtaaggcatagtagtgcaagattcccacaaatca |
38325297 |
T |
|
| Q |
165 |
aaagttaaagatatcctattaggaatagtagccagctgttgtttaa |
210 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||| |||||||||| |
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|
| T |
38325296 |
aaagttaaagataccctattaggaatggtagccaattgttgtttaa |
38325251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 57 - 236
Target Start/End: Complemental strand, 38308564 - 38308385
Alignment:
| Q |
57 |
aaaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccc |
156 |
Q |
| |
|
||||||||||||||||| | || ||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||| ||| ||| |||||||| |
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|
| T |
38308564 |
aaaacaagacagaaattgaaaagcttactatttaacttccaatccgcgccaacaaaatgagcggataaacaaatataagtgccagtagtacaagattccc |
38308465 |
T |
|
| Q |
157 |
acagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaa |
236 |
Q |
| |
|
||| ||||| |||||||||||| ||| |||||| |||||||| |||||||| | || |||||||||| ||||||||| |
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|
| T |
38308464 |
acaactcaaaggttaaagatatcttataaggaatggtagccagttgttgtttgagcttatgtttctcttccgtgtacaaa |
38308385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 237
Target Start/End: Original strand, 38850787 - 38850966
Alignment:
| Q |
58 |
aaacaagacagaaattaagaaccttactatttaacttccaatccgcgtcaacaaaatgagcggtcaaacagatataagtctcagcagtgttagattccca |
157 |
Q |
| |
|
||||||||| |||||| | ||||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||| |
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|
| T |
38850787 |
aaacaagacggaaattgataaccttactatttaacttccaattcgcgtcaacaaaatgagcagtcaaacaaatataagtctcagtagtgttagattccca |
38850886 |
T |
|
| Q |
158 |
cagatcaaaagttaaagatatcctattaggaatagtagccagctgttgtttaatattgagtttctcttcagtgtacaaat |
237 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||| |||| | |||||||||| || ||||||||| |||||||||| |
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|
| T |
38850887 |
caaatcaaaagataaagatatcctattaggaatggtagttaattgttgtttaagcttaggtttctctttcgtgtacaaat |
38850966 |
T |
|
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