View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_21 (Length: 251)
Name: NF9766_low_21
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_21 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 1459479 - 1459262
Alignment:
| Q |
20 |
aatgtagggttatctacattacgtcttccctacattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacgat |
119 |
Q |
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| T |
1459479 |
aatgtagggttatctacattacgtcttccctgcattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacgat |
1459380 |
T |
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| Q |
120 |
tgccccaagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatttgannnnnnnnccttccttttcttaacatacatgtat |
219 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||||||| |
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| T |
1459379 |
tgccccaagcttcaaactcttgaactttatcaggtttgtttctta-attttaacaattatatttgattttttttccttccttttcttaacatacatgtat |
1459281 |
T |
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| Q |
220 |
gtatcgttttattttgtct |
238 |
Q |
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||||||||||||||||||| |
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| T |
1459280 |
gtatcgttttattttgtct |
1459262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 126 - 185
Target Start/End: Original strand, 12105289 - 12105347
Alignment:
| Q |
126 |
aagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatttga |
185 |
Q |
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| T |
12105289 |
aagcttcaaaatcttgacctttttcaggtttgtttctta-aatttaacaatcatatttga |
12105347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 1446138 - 1446022
Alignment:
| Q |
48 |
cctacattcaataatttgactcatttggtgctcaactatagtcacagtatagatctgcagatgctccacgattgccccaagcttcaaactcttgaccttt |
147 |
Q |
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| T |
1446138 |
cctacattccataatttgactcatttggtgctcagctacagttggggtatagttcaacgtgtgctctacctttgccctaagcttcaaaatattgaatttt |
1446039 |
T |
|
| Q |
148 |
atcaggtttgtttctta |
164 |
Q |
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||||||||||||||||| |
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| T |
1446038 |
atcaggtttgtttctta |
1446022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 80
Target Start/End: Original strand, 12105211 - 12105243
Alignment:
| Q |
48 |
cctacattcaataatttgactcatttggtgctc |
80 |
Q |
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| T |
12105211 |
cctacattccataatttgactcatttggtgctc |
12105243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 974078 - 974027
Alignment:
| Q |
109 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
160 |
Q |
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| T |
974078 |
tgctccatcattgccctaagcttcaaaatcttgacctttatcaggtttgttt |
974027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 182
Target Start/End: Complemental strand, 965532 - 965460
Alignment:
| Q |
109 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgtttcttataatttatcaattatatt |
182 |
Q |
| |
|
||||||| ||||||| |||||||||| |||||| ||||||||||||||||| ||| |||||| |||| ||||| |
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| T |
965532 |
tgctccatcattgccctaagcttcaaaatcttgaactttatcaggtttgtttgtta-aatttaacaatcatatt |
965460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 821147 - 821195
Alignment:
| Q |
109 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttg |
157 |
Q |
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|||||||| ||||||| |||||||||| |||||| |||||||||||||| |
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|
| T |
821147 |
tgctccaccattgccctaagcttcaaaatcttgaactttatcaggtttg |
821195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 982147 - 982096
Alignment:
| Q |
109 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
160 |
Q |
| |
|
|||||||| ||||| |||||||||| |||||||||||||||||||||||| |
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| T |
982147 |
tgctccaccattgctttaagcttcaaaatcttgacctttatcaggtttgttt |
982096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 49 - 88
Target Start/End: Original strand, 1399496 - 1399535
Alignment:
| Q |
49 |
ctacattcaataatttgactcatttggtgctcaactatag |
88 |
Q |
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|||||||| |||||||||||||| |||||||||||||||| |
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| T |
1399496 |
ctacattccataatttgactcatctggtgctcaactatag |
1399535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 87
Target Start/End: Original strand, 1403200 - 1403239
Alignment:
| Q |
48 |
cctacattcaataatttgactcatttggtgctcaactata |
87 |
Q |
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| T |
1403200 |
cctacattccataatttgactcatctggtgctcaactata |
1403239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 45810614 - 45810576
Alignment:
| Q |
48 |
cctacattcaataatttgactcatttggtgctcaactat |
86 |
Q |
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|||||||||||||||||||||||||||||| |||||||| |
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| T |
45810614 |
cctacattcaataatttgactcatttggtggtcaactat |
45810576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 10116814 - 10116763
Alignment:
| Q |
109 |
tgctccacgattgccccaagcttcaaactcttgacctttatcaggtttgttt |
160 |
Q |
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|||||||| ||||||| || ||||||| |||||| ||||||||||||||||| |
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| T |
10116814 |
tgctccaccattgccctaaccttcaaaatcttgaactttatcaggtttgttt |
10116763 |
T |
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