View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_24 (Length: 240)
Name: NF9766_low_24
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 29207451 - 29207229
Alignment:
| Q |
1 |
catccttgaagaaagcatggcgtttaacctgcacaaaataatatattatttgattgtgtatatgtaataccataatttgcgagtactccgtttcaaaagg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29207451 |
catccttgaagaaagcatggcgtttaacctgcacaaaataatatattatttgattgtgtatatgtaataccataatttgcgagtactccgtttcaaaagg |
29207352 |
T |
|
| Q |
101 |
cactgaataactcacttctgttgctcctgttacacctaatctttggactgggttttcgatcagtaatctgagagagaacttcactgtcagctataatcaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29207351 |
cactgaataactcacttctgttgctcctgttacacctaatctttggactgggttttcgatcagtaatctgaaagagaacttcactgtcagctataatcaa |
29207252 |
T |
|
| Q |
201 |
catgacaggaaacataatgtatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
29207251 |
catgacaggaaacataatgtatc |
29207229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 12644350 - 12644572
Alignment:
| Q |
1 |
catccttgaagaaagcatggcgtttaacctgcacaaaataatatattatttgattgtgtatatgtaataccataatttgcgagtactccgtttcaaaagg |
100 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12644350 |
catccttgaagaaagcatggcgtttaacctgcacaaaataatatattatttgattgtgtatatgtaataccataatttgtgagtactccgtttcaaaagg |
12644449 |
T |
|
| Q |
101 |
cactgaataactcacttctgttgctcctgttacacctaatctttggactgggttttcgatcagtaatctgagagagaacttcactgtcagctataatcaa |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
12644450 |
cactgaataactcacttctgtagctcctgttacacctaatctttggactgggttttcgatcagtaatctgaaagagaacttcactgtcagctataatcaa |
12644549 |
T |
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| Q |
201 |
catgacaggaaacataatgtatc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
12644550 |
catgacaggaaacataatgtatc |
12644572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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