View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9766_low_25 (Length: 238)
Name: NF9766_low_25
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 34702493 - 34702721
Alignment:
| Q |
1 |
ctttgactgaactgatccagataaagtgtatataccatgagacaaatatgttaatttacattccatttattaatttttatatcttgatttgttggtttat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34702493 |
ctttgactgaactgatccagataaagtgtatataccatgagacaaatatgttaatttacattccatttattaatttttatatcttgatttgttggtttat |
34702592 |
T |
|
| Q |
101 |
gtaatctactat--tctcagtttcataatgctatttcttctgtctcatcataaatgtctattttataaaataaaaaagagaaatgttaacttatgctttt |
198 |
Q |
| |
|
|||||||||||| |||| |||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
34702593 |
gtaatctactattctctccatttcataatgctatttcttctgtctcataataaatatctattttataaaataaaaaagagaaatgttaacttgtgccctt |
34702692 |
T |
|
| Q |
199 |
aaggtacaagttaagaagttaaagatgat |
227 |
Q |
| |
|
|||| |||||||||||||||||||||||| |
|
|
| T |
34702693 |
aaggcacaagttaagaagttaaagatgat |
34702721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Complemental strand, 19905467 - 19905425
Alignment:
| Q |
170 |
aaaaaagagaaatgttaacttatgcttttaaggtacaagttaa |
212 |
Q |
| |
|
|||| ||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
19905467 |
aaaatagagaaatgttaatttgtgcttttaaggtacaagttaa |
19905425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 53039566 - 53039520
Alignment:
| Q |
169 |
taaaaaagagaaatgttaacttatgcttttaaggtacaagttaagaa |
215 |
Q |
| |
|
|||| ||||||||||||||||| |||| |||||||||| |||||||| |
|
|
| T |
53039566 |
taaataagagaaatgttaacttgtgctcttaaggtacatgttaagaa |
53039520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 45891753 - 45891802
Alignment:
| Q |
166 |
aaataaaaaagagaaatgttaacttatgcttttaaggtacaagttaagaa |
215 |
Q |
| |
|
||||||| ||| ||||||||||||| |||| |||||| |||||||||||| |
|
|
| T |
45891753 |
aaataaataagggaaatgttaacttgtgctcttaaggcacaagttaagaa |
45891802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 40372664 - 40372709
Alignment:
| Q |
179 |
aaatgttaacttatgcttttaaggtacaagttaagaagttaaagat |
224 |
Q |
| |
|
|||||||||||| ||| ||||||||||| |||||||||||||||| |
|
|
| T |
40372664 |
aaatgttaacttgtgcccttaaggtacaaattaagaagttaaagat |
40372709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 44224565 - 44224610
Alignment:
| Q |
179 |
aaatgttaacttatgcttttaaggtacaagttaagaagttaaagat |
224 |
Q |
| |
|
||||||||||| || |||||||||| ||||||||||||||||||| |
|
|
| T |
44224565 |
aaatgttaactcgtgtttttaaggtataagttaagaagttaaagat |
44224610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 19644175 - 19644223
Alignment:
| Q |
173 |
aaagagaaatgttaacttatgcttttaaggtacaagttaagaagttaaa |
221 |
Q |
| |
|
|||||||||||||||||| |||| |||| | ||||||||| |||||||| |
|
|
| T |
19644175 |
aaagagaaatgttaacttgtgctcttaaagcacaagttaaaaagttaaa |
19644223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 17518020 - 17517972
Alignment:
| Q |
176 |
gagaaatgttaacttatgcttttaaggtacaagttaagaagttaaagat |
224 |
Q |
| |
|
||||||||||||||| ||| || ||||||||||||||||| | |||||| |
|
|
| T |
17518020 |
gagaaatgttaacttgtgccttcaaggtacaagttaagaaatcaaagat |
17517972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University