View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_28 (Length: 221)
Name: NF9766_low_28
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_28 |
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| [»] chr2 (4 HSPs) |
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| [»] scaffold0083 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 11479759 - 11479979
Alignment:
| Q |
1 |
caggtgcaattggatcaactctatatggacaggtgacattaaattatcacaataagtgttaacttttgaatactactttgaagttacatggtgcctacgt |
100 |
Q |
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| T |
11479759 |
caggtgcaattggatcaactctatatggacaggtgacattaaattatcacaataagtgttaacttttgaatactactttgaagttacatggtgcctacat |
11479858 |
T |
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| Q |
101 |
acatgaaaatattgcagcattgagtagcttaaaactaaataagttgtgttatttgaataattaaaatttgtctattttaaccataactttttaaatggtt |
200 |
Q |
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| T |
11479859 |
acatgaaaatattgcagcattgagtagcttaaaactaaataagttgtgttatttcaacaattaaattttgtctattttaaccacaactttttaaatggtt |
11479958 |
T |
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| Q |
201 |
gtcatggttcaaatatgtggc |
221 |
Q |
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| T |
11479959 |
ctcatggtttaaatatgtggc |
11479979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 11485853 - 11485930
Alignment:
| Q |
1 |
caggtgcaattggatcaactctatatggacaggtg-acattaaattatcacaataagtgttaacttttgaatactact |
77 |
Q |
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| T |
11485853 |
caggtgcaattggatcaactctatatggaaaggtgaacattaaataattgcaatcattgttaatatttgaatgctact |
11485930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 168
Target Start/End: Original strand, 11474451 - 11474491
Alignment:
| Q |
128 |
cttaaaactaaataagttgtgttatttgaataattaaaatt |
168 |
Q |
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| T |
11474451 |
cttaaaaataaataagttgtgttatttgaaaaattaaaatt |
11474491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 11473582 - 11473617
Alignment:
| Q |
1 |
caggtgcaattggatcaactctatatggacaggtga |
36 |
Q |
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| T |
11473582 |
caggtgcaattggatcaactctatatggaaaggtga |
11473617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 21547372 - 21547415
Alignment:
| Q |
1 |
caggtgcaattggatcaactctatatggacaggtgacattaaat |
44 |
Q |
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| T |
21547372 |
caggtgcaattggatcaactctatatggacaggtgacattaaat |
21547415 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 48419 - 48462
Alignment:
| Q |
1 |
caggtgcaattggatcaactctatatggacaggtgacattaaat |
44 |
Q |
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| T |
48419 |
caggttcaattggatcaactctatatggacaggtgacattaaat |
48462 |
T |
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