View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_3 (Length: 429)
Name: NF9766_low_3
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 27818318 - 27818689
Alignment:
| Q |
1 |
acactaaaactagtataaaccgtgattcaaccataaagtctttataataagcagtataaaccgtgaaagatgataatcattggtcgagttttgaagacta |
100 |
Q |
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| T |
27818318 |
acactaaaattagtataaactatgattcaaccgtaaagtcttcataataaacagtataaaccgtgaaagatgataattattggtcgagttttgaagacta |
27818417 |
T |
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| Q |
101 |
tattaattgtggtggcccttaaacaagtttggaaaaaagcaggatttacccaactaatttcgaattcatagatagactatatcaatgcaattactttaat |
200 |
Q |
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| T |
27818418 |
tattaattgtggtgacccttaaacaagtttgggaaaaagttggatttacccaactaatttcgaattcatagatagactatatcaatgcaattactttaat |
27818517 |
T |
|
| Q |
201 |
agaaccttcgtgttctttatnnnnnnnnnttgttatattcgttttaatttgtagcaccgacacttctaatcgaaagtatgtc-gtgtcccacatcaacac |
299 |
Q |
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| T |
27818518 |
acaacattcgtgttctttataaaaaaaaattgttatatttgttttaatttgtagcaccgacacttctaatcgaaggtatgtcagtgtcccacatcaacac |
27818617 |
T |
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| Q |
300 |
aacatttataggtgtgattaaattcaannnnnnnnnnnnaaattattgcaagtgtcaatgtgtttttcatag |
371 |
Q |
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|||| | | ||||||||||| |||||| ||||||| |||||||||||||||||||||||| |
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| T |
27818618 |
aacactaacaggtgtgattatattcaatttttttttttttaattattacaagtgtcaatgtgtttttcatag |
27818689 |
T |
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