View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9766_low_4 (Length: 398)

Name: NF9766_low_4
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9766_low_4
NF9766_low_4
[»] chr5 (18 HSPs)
chr5 (5-380)||(37437271-37437646)
chr5 (179-377)||(37704379-37704578)
chr5 (3-169)||(37698361-37698527)
chr5 (1-161)||(37713190-37713350)
chr5 (189-312)||(37698571-37698694)
chr5 (1-158)||(37641447-37641604)
chr5 (1-161)||(37534666-37534826)
chr5 (4-161)||(37391375-37391532)
chr5 (1-151)||(37595896-37596049)
chr5 (255-380)||(37698974-37699102)
chr5 (18-158)||(37411743-37411883)
chr5 (6-161)||(37441515-37441669)
chr5 (2-108)||(37380810-37380916)
chr5 (1-147)||(37704234-37704380)
chr5 (12-108)||(37399290-37399386)
chr5 (1-104)||(37825479-37825582)
chr5 (18-151)||(37430340-37430473)
chr5 (333-368)||(37698699-37698734)
[»] chr3 (1 HSPs)
chr3 (1-161)||(14554625-14554782)
[»] chr4 (4 HSPs)
chr4 (1-169)||(16841305-16841473)
chr4 (9-151)||(24216181-24216323)
chr4 (177-245)||(16841203-16841274)
chr4 (336-368)||(16841114-16841146)


Alignment Details
Target: chr5 (Bit Score: 331; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 5 - 380
Target Start/End: Original strand, 37437271 - 37437646
Alignment:
Q  5 aaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaag 104  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437271 aaaagagtttttgaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaag 37437370  T
Q  105 tgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacaccgattctcnnnnnnnactttgatgatttaggatataccaaatg 204  Q
    ||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  37437371 tgaagggcaaaacaaggcaaaagaataaaaaaggaccccatttagagcaacttacaccgattctctttttttactttgatgatttaggatataccaaatg 37437470  T
Q  205 attagcctctatttatataggaaacataacctgaaactaaggggcaaggaccaaaaagtctgacttattagattgtttacaaattcagtctagctattcc 304  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437471 attagcctctatttatataggaaacataacttgaaactaaggggcaaggaccaaaaagtctgacttattagattgtttacaaattcagtctagctattcc 37437570  T
Q  305 cttattttaatgtggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaat 380  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37437571 cttgttttaatgtggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataacaat 37437646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 179 - 377
Target Start/End: Original strand, 37704379 - 37704578
Alignment:
Q  179 tttgatgatttaggatataccaaatgattagcctctatttatataggaaacataacctgaaactaaggggcaaggaccaaaaagtctgacttattagatt 278  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  37704379 tttgatgatttaggatataccaattgattagcctctatttatataggaaacataacctgaaactaaggggcaaggaccaaaaaggttgacttattagatt 37704478  T
Q  279 gtttacaaattcagtctagctattcccttattttaatgt-ggggtgcttttcataaccgtatagtgatatgacaattggcaacaatattaattcaataac 377  Q
    |||| |||||| ||||||  ||||||||||||||  | | |||||||||||||||| | |||| |||||||||| |||||||||||||||||||| ||||    
T  37704479 gtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaattcagtaac 37704578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 37698361 - 37698527
Alignment:
Q  3 gaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaaca 102  Q
    ||||| |||||||| |||||||| ||||||||  ||||||||||||||||||||||||  |||| || |||||| |||||||||||||||||| |||| |    
T  37698361 gaaaatgagtttttgaattgtaacaaggcagaactgtcatgatggttgcataatgagagtgtgtaggaagtaaaatgagtaagcaacaacaacaagaaaa 37698460  T
Q  103 agtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacaccgattctc 169  Q
    |||||| || |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37698461 agtgaaaggcaaaataaggcaatagaataaaaaaggaccccatttagagcaacttacaccgattctc 37698527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 37713190 - 37713350
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    |||||||||||||||| |||||||| ||||||||| ||||||| | |||||| | |||||||||||||| |||||| |||||||||||||||||||||||    
T  37713190 cagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtgggaagtaaaatgagtaagcaacaacaacgagaa 37713289  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacac 161  Q
     ||||||| || ||||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  37713290 gaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagagaaacttacac 37713350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 189 - 312
Target Start/End: Original strand, 37698571 - 37698694
Alignment:
Q  189 taggatataccaaatgattagcctctatttatataggaaacataacctgaaactaaggggcaaggaccaaaaagtctgacttattagattgtttacaaat 288  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||    
T  37698571 taggatataccaattgattagcctctatttatataggaaacataacctgaaactacggggaaaggaccaaaaagtttgacttattagattgtttacaaat 37698670  T
Q  289 tcagtctagctattcccttatttt 312  Q
    | ||||||  ||||||||||||||    
T  37698671 tgagtctaagtattcccttatttt 37698694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 37641447 - 37641604
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||| | ||||||||||| || |||||| ||||||| |||||||||| | ||    
T  37641447 cagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaacaa 37641546  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaactta 158  Q
     ||||||| || ||||||||||||  ||||||||||||| ||||||||||| ||||||    
T  37641547 gaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagagaaactta 37641604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 37534666 - 37534826
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    |||||||||||||||| |||||||| ||||||||| ||||||| | |||||| | ||||||||||| || |||||| ||||||| |||||||||| ||||    
T  37534666 cagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaagaa 37534765  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacac 161  Q
     ||||||| || ||||||||||||  ||||||||||||| ||||||||||| |||||||||    
T  37534766 aaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagagaaacttacac 37534826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 4 - 161
Target Start/End: Complemental strand, 37391532 - 37391375
Alignment:
Q  4 aaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaa 103  Q
    |||| |||||||| |||||||  ||||||||| | |||||| ||||||| ||||||| ||| | || |||||| ||||||||||||||||||  ||||||    
T  37391532 aaaatgagtttttgaattgtagcaaggcagagctatcatgaaggttgcacaatgagagagtataggaagtaaaatgagtaagcaacaacaacatgaacaa 37391433  T
Q  104 gtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacac 161  Q
    ||||| || |||||||||||| | |||||| |||||||||||||||||||||||||||    
T  37391432 gtgaaaggtaaaataaggcaataaaataaacaaggaccccatttagagcaacttacac 37391375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 37595896 - 37596049
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagta---agcaacaacaacga 97  Q
    |||||||||||||||| |||||||| ||||||||| ||||||| | |||||| ||||||||||||| || |||||| ||||||   |||||||||||| |    
T  37595896 cagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacaatgagaaagtgtaggaagtaaaatgagtaagcagcaacaacaacaa 37595995  T
Q  98 gaacaagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagag 151  Q
    ||| ||||||| || ||||||||||||  ||||||||||||| |||||||||||    
T  37595996 gaaaaagtgaaaggtaaaataaggcaatggaataaaaaaggatcccatttagag 37596049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 255 - 380
Target Start/End: Original strand, 37698974 - 37699102
Alignment:
Q  255 ccaaaaagtctgacttattagattgtttacaa--attcagtctagctattcccttattttaatgt--ggggtgcttttcataaccgtatagtgatatgac 350  Q
    ||||||||| ||| ||||||||||||||||||  ||| ||||||| ||||||||||||||  |||  ||||||||||||||||||||||| |||||||||    
T  37698974 ccaaaaagtttgagttattagattgtttacaaacattgagtctaggtattcccttatttt-gtgttgggggtgcttttcataaccgtatactgatatgac 37699072  T
Q  351 aattggcaacaatattaattcaataacaat 380  Q
    | |||||||||||||||||||| |||||||    
T  37699073 atttggcaacaatattaattcagtaacaat 37699102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 158
Target Start/End: Complemental strand, 37411883 - 37411743
Alignment:
Q  18 aattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaagtgaagggaaaaat 117  Q
    |||||||| |||||| || ||||||||| ||||||||||||||| |||| || |||||| ||||||| || || |||| |||||||||||| || |||||    
T  37411883 aattgtaacaaggcaaagctgtcatgatagttgcataatgagaaggtgtaggaagtaaaatgagtaaacagcagcaacaagaacaagtgaaaggtaaaat 37411784  T
Q  118 aaggcaagagaataaaaaaggaccccatttagagcaactta 158  Q
    | | ||| |||| |||| |||||||||||||||||||||||    
T  37411783 aggacaatagaacaaaacaggaccccatttagagcaactta 37411743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 6 - 161
Target Start/End: Original strand, 37441515 - 37441669
Alignment:
Q  6 aaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaagt 105  Q
    ||||||||||| |||||||| ||||||||||||||||| | ||| || | ||||||||| | || |||||| |||||||||| ||||||  |||||| ||    
T  37441515 aaagagtttttgaattgtaacaaggcagaggtgtcatgtttgtttcacagtgagaaagtataggaagtaaaatgagtaagcagcaacaagaagaacatgt 37441614  T
Q  106 gaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacac 161  Q
    ||| || |||||||||||| | |||||||||||| |||||||||||  ||||||||    
T  37441615 gaaaggtaaaataaggcaataaaataaaaaagga-cccatttagagatacttacac 37441669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 37380916 - 37380810
Alignment:
Q  2 agaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaac 101  Q
    |||||| |||||||| || ||||| |||||||| || ||||| |||||||| |||||||||||||||| |||||| |||||||||||||||||| |||||    
T  37380916 agaaaatgagtttttgaaatgtaacaaggcagatgtatcatgttggttgcacaatgagaaagtgtgggaagtaaaatgagtaagcaacaacaacaagaac 37380817  T
Q  102 aagtgaa 108  Q
    |||||||    
T  37380816 aagtgaa 37380810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 37704234 - 37704380
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    ||||||| |||| ||| |||||||| ||||| ||| | ||||| ||| |||| ||||||||||||| || |||||| |||||||||| ||| ||| ||||    
T  37704234 cagaaaatgagtgtttgaattgtaacaaggcggagctatcatgttggctgcacaatgagaaagtgtaggaagtaaaatgagtaagcagcaataacaagaa 37704333  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccattt 147  Q
    ||||||||  | |||||||||||| |||||||||||||||| |||||    
T  37704334 caagtgaaaagtaaaataaggcaatagaataaaaaaggaccgcattt 37704380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 12 - 108
Target Start/End: Complemental strand, 37399386 - 37399290
Alignment:
Q  12 tttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaagtgaa 108  Q
    ||||| |||||||| |||||||||||||||||||||||||||| |||||||||||  | |||||| ||||||| |||||||||| ||||||||||||    
T  37399386 tttttgaattgtaacaaggcagaggtgtcatgatggttgcatagtgagaaagtgtatgaagtaaaatgagtaatcaacaacaacaagaacaagtgaa 37399290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 37825479 - 37825582
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    |||||||||||||||| |||||||| ||||||||| ||||||| | |||||| | ||||||||||| || |||||| ||||||| |||||||||| ||||    
T  37825479 cagaaaaagagtttttgaattgtaacaaggcagagttgtcatgtttgttgcacagtgagaaagtgtaggaagtaaaatgagtaatcaacaacaacaagaa 37825578  T
Q  101 caag 104  Q
    ||||    
T  37825579 caag 37825582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 37430340 - 37430473
Alignment:
Q  18 aattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaagtgaagggaaaaat 117  Q
    |||||||| ||||||||  |||||||||| ||||| | ||| || || | || ||||||  |||| |||| || |||| |||||||||||| || || ||    
T  37430340 aattgtaacaaggcagaactgtcatgatgcttgcacattgaaaatgtataggaagtaaaaagagttagcagcatcaacaagaacaagtgaaaggcaagat 37430439  T
Q  118 aaggcaagagaataaaaaaggaccccatttagag 151  Q
    |||| || |||| | |||||||||||||||||||    
T  37430440 aaggaaatagaaaacaaaaggaccccatttagag 37430473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 368
Target Start/End: Original strand, 37698699 - 37698734
Alignment:
Q  333 accgtatagtgatatgacaattggcaacaatattaa 368  Q
    ||||||||||||||||||||||||||||||||||||    
T  37698699 accgtatagtgatatgacaattggcaacaatattaa 37698734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 14554625 - 14554782
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    |||||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| | || |||||| |||||||||||||| |   ||||    
T  14554625 cagaaaaagagtttttgaattgtaacaaggcagaggtgtcatgttggttgcacaatgagaaagtataggaagtaaaatgagtaagcaacaata---agaa 14554721  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacac 161  Q
     ||||||| || |||||||||||| |||||||||||||| ||||||||||| |||||||||    
T  14554722 aaagtgaaaggtaaaataaggcaatagaataaaaaaggatcccatttagagaaacttacac 14554782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 85; Significance: 2e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 16841473 - 16841305
Alignment:
Q  1 cagaaaaagagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaa 100  Q
    ||||||| |||||||| || ||||| || |||||| ||||||| |||||||| ||||| |||||||| | ||||||||||||||||| || ||   ||||    
T  16841473 cagaaaatgagtttttgaaatgtaacaaagcagagctgtcatgttggttgcagaatgacaaagtgtgtgaagtaaagtgagtaagcagcagcacaaagaa 16841374  T
Q  101 caagtgaagggaaaaataaggcaagagaataaaaaaggaccccatttagagcaacttacaccgattctc 169  Q
    ||||||||||| |||| ||||||| | |||||||||||||||||||||||||||||||| |||||||||    
T  16841373 caagtgaagggcaaaacaaggcaaaacaataaaaaaggaccccatttagagcaacttactccgattctc 16841305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 151
Target Start/End: Complemental strand, 24216323 - 24216181
Alignment:
Q  9 gagtttttaaattgtaataaggcagaggtgtcatgatggttgcataatgagaaagtgtgggtagtaaagtgagtaagcaacaacaacgagaacaagtgaa 108  Q
    ||||| || |||||||| || |||||  |||||||||||||||| |||||| ||||||  | |||||| ||||||||||||||||||  |||||||||||    
T  24216323 gagttcttgaattgtaacaatgcagaactgtcatgatggttgcagaatgagtaagtgtaagaagtaaaatgagtaagcaacaacaacatgaacaagtgaa 24216224  T
Q  109 gggaaaaataaggcaagagaataaaaaaggaccccatttagag 151  Q
     ||  |||| |||||  |||||||||||||| ||||| |||||    
T  24216223 aggtcaaatgaggcattagaataaaaaaggaacccatatagag 24216181  T

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Target: chr4; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 16841274 - 16841203
Alignment:
Q  177 actttgatgatttaggatataccaaatgattagcctc---tatttatataggaaacataacctgaaactaag 245  Q
    |||||||||||||| |||||||||| |||||||||||   ||||||||||||||||||||||||||||||||    
T  16841274 actttgatgatttacgatataccaactgattagcctcctctatttatataggaaacataacctgaaactaag 16841203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 336 - 368
Target Start/End: Complemental strand, 16841146 - 16841114
Alignment:
Q  336 gtatagtgatatgacaattggcaacaatattaa 368  Q
    |||||||||||||||||||||||||||||||||    
T  16841146 gtatagtgatatgacaattggcaacaatattaa 16841114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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