View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9766_low_9 (Length: 355)
Name: NF9766_low_9
Description: NF9766
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9766_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 350
Target Start/End: Complemental strand, 11296714 - 11296381
Alignment:
| Q |
17 |
atgtgcacatcagaaacatgctaatagagcactaaagttggtgtatttccaacaggctaaagttgcagtggaattggccatgaaggataacaaacagcta |
116 |
Q |
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| T |
11296714 |
atgtgcacatcagaaacatgctaatagagcactaaagttggtttatttccaacaggctaaagttgcagtggaattggccatgaaggataacaaacagcta |
11296615 |
T |
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| Q |
117 |
atggtgagtcatatctgataacattttaattagcaattgagaatgaaagttgcacactccaaactgaggagtgaatctactatagagcctataatgaaca |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11296614 |
atggtgagtcatatctgataacattttaattagcaattgagaatgaaagttgcacactccaaactgaggagtgaatctactatagagcctataatgaaca |
11296515 |
T |
|
| Q |
217 |
acgatcttaaacaggagattgagtttcccacagctggactcgaatccgtaccaggtcctatatatttcagtttcctgggttttttagggtgtgcagttgt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11296514 |
acgatcttaaacaggagattgagtttcccacagctggactcgaatccgtaccaggtcctatatatttcagtttcctgggttttttagggtgtgcagttgt |
11296415 |
T |
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| Q |
317 |
ttcaaattataaaagcaatttgattcatctcact |
350 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11296414 |
ttcaaattataaaagcaatttgattcatctcact |
11296381 |
T |
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