View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_high_1 (Length: 456)
Name: NF9767_high_1
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 7 - 441
Target Start/End: Complemental strand, 7204684 - 7204254
Alignment:
| Q |
7 |
taaggttcattaattacatattcaatttcagagtgtcaagcttcattgaaagtgctttgatatttttatttcatttatagtttaaaccaaattaggttat |
106 |
Q |
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| T |
7204684 |
taaggttcattaattacatatttaatttcagagtgtcaagcttcattgaaagtgcttcgatattttcatttcatttatagtttaaa----attaggttat |
7204589 |
T |
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| Q |
107 |
atttgttcaaataaacctattagattatcaagtttttaagtgaatgaaagcggacacacttctaatattttaatgcgcttatgttgacaataatgagtga |
206 |
Q |
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| T |
7204588 |
atttgttcaaatcaacctattagattatcaagtttttaagtgaatgaaagcagacacacttataatattttaatgcgcttatgttgacaataatgagtga |
7204489 |
T |
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| Q |
207 |
atttggtacataattttatgtatacttgacttgatcaaagctactttactttgcttcaaattttatgtattccaaaggttattattattgatctttccct |
306 |
Q |
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| T |
7204488 |
acttggtacataattttatctatacttgacttgatcaaagctactttactctgcttcaaattttatgtattccaaaggttattattattgatctttccct |
7204389 |
T |
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| Q |
307 |
cttcttgcttatgtagttatcaatccctaacataaaatgtggctggagaacaagtgaattagaacctatatgcttaaatccatgtgcagtttgtttcgaa |
406 |
Q |
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| T |
7204388 |
cttcttgcttatgttgttatcaatccataacagagaatgtggttggaggaaaagtgaattagcacctatatgcttatatccatgtgcagtttgtttggaa |
7204289 |
T |
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| Q |
407 |
aggaaatgtatggtcgttgtagaaggtataacacc |
441 |
Q |
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| T |
7204288 |
aggaaatgtatggtcgctgtagaaggtagaacacc |
7204254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 4e-70; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 261 - 439
Target Start/End: Original strand, 53930563 - 53930741
Alignment:
| Q |
261 |
ttcaaattttatgtattccaaaggttattattattgatctttccctcttcttgcttatgtagttatcaatccctaacataaaatgtggctggagaacaag |
360 |
Q |
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| T |
53930563 |
ttcaaattttatgtattccaaaggttactattattgatctttccctcttcttgcttatgttgttatcaattcctaacagagaatgtggctggaggacaag |
53930662 |
T |
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| Q |
361 |
tgaattagaacctatatgcttaaatccatgtgcagtttgtttcgaaaggaaatgtatggtcgttgtagaaggtataaca |
439 |
Q |
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| T |
53930663 |
tgaattagcacctatatgcttagatccatgtgcagtttgtttggaaagaaaatgtatggtcgctgtagaaggtataaca |
53930741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 7 - 136
Target Start/End: Original strand, 53930405 - 53930533
Alignment:
| Q |
7 |
taaggttcattaattacatattcaatttcagagtgtcaagcttcattgaaagtgctttgatatttttatttcatttatagtttaaaccaaattaggttat |
106 |
Q |
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| T |
53930405 |
taaggttcattaattacatatttaatttctgtgtcatcagcttcattgaaagtgctttgatcttttcatttcatttatagttt-aaccaaataaggttat |
53930503 |
T |
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| Q |
107 |
atttgttcaaataaacctattagattatca |
136 |
Q |
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| T |
53930504 |
atttgttcaaatcaatctattagattatca |
53930533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 176
Target Start/End: Original strand, 54287590 - 54287637
Alignment:
| Q |
129 |
gattatcaagtttttaagtgaatgaaagcggacacacttctaatattt |
176 |
Q |
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| T |
54287590 |
gattatcaagtttcttagtgattgaaagcagacacacttctaatattt |
54287637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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