View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_low_10 (Length: 254)
Name: NF9767_low_10
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_10 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 134 - 254
Target Start/End: Complemental strand, 6868729 - 6868610
Alignment:
| Q |
134 |
aggtatgttattttatttgatttgattcttttcctcagagccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacaca |
233 |
Q |
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| T |
6868729 |
aggtatgttatttgatttgatttgattcttttcctcagagccattttta-gccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacaca |
6868631 |
T |
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| Q |
234 |
cacgacacgataagaagggct |
254 |
Q |
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| T |
6868630 |
cacgacacgataagaagggct |
6868610 |
T |
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Target: chr8; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 10 - 93
Target Start/End: Complemental strand, 6868811 - 6868728
Alignment:
| Q |
10 |
agagagatgaaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggag |
93 |
Q |
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| T |
6868811 |
agagagatcaaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggag |
6868728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 166
Target Start/End: Original strand, 47149928 - 47150072
Alignment:
| Q |
19 |
aaaatcgaatatattgcttacccaatagtgaagattcaatctttagtgcgttaacaataacaacaggttctggagaaatagcttattcatctggaaccac |
118 |
Q |
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| T |
47149928 |
aaaatcgaagatattgcttatccaatagtaaagattcaatttttagtgcattaacaa---caatgggttctggagaaatagcttcttcatctggaaacac |
47150024 |
T |
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| Q |
119 |
caacgtttctagctcaggtatgttattttatttgatttgattcttttc |
166 |
Q |
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| T |
47150025 |
taacgtttctagctcaggtatgttattttctttgatttgattcatttc |
47150072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 14080018 - 14080085
Alignment:
| Q |
172 |
agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacacacacgacacgataag |
247 |
Q |
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| T |
14080018 |
agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag |
14080085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 172 - 247
Target Start/End: Original strand, 14390046 - 14390113
Alignment:
| Q |
172 |
agccatttttatgccaaaacgggtgggtccccacacaaactaatacgtacttgtgtgacacacacgacacgataag |
247 |
Q |
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| T |
14390046 |
agccattttgatgccaaaacgggt----ccccacacaaactagtacgt----gtgtgacacacacgacatgataag |
14390113 |
T |
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