View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9767_low_12 (Length: 245)
Name: NF9767_low_12
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 15 - 229
Target Start/End: Original strand, 1412202 - 1412416
Alignment:
| Q |
15 |
cagagactacgtaaattttcatagcaaagttttacaatgtgagtctcatggactatgatatttctttcatcaaaaggttgtcaagtagagagtcttttcg |
114 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1412202 |
cagagactacatacattttcatagcaaagttttacaatgtgagtctcatggactatgatatttctttcatcaaaaggttgtcaagtagagagtcttttcg |
1412301 |
T |
|
| Q |
115 |
atgagagcttcaagaaatgatatctactgggtcattatcaaatcattttcatccctaatgaataaagcaagtggtctcttagtcacaagatcaaataaag |
214 |
Q |
| |
|
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1412302 |
acgagagcttcaagaaatgatatctactaggtcattatcaaatcattttcatccctaatgaataaagcaagtggtctcttagtcacaagatcaaataaag |
1412401 |
T |
|
| Q |
215 |
gagatccgaatatgt |
229 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1412402 |
gagatccgaatatgt |
1412416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University