View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_low_3 (Length: 424)
Name: NF9767_low_3
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 7 - 413
Target Start/End: Original strand, 1154745 - 1155130
Alignment:
| Q |
7 |
caaatctttccaatacttccatcacatatcttttttgactaatggaaaatgccatcagtattttgaattacttc-aacgccaagaaagtacctaatcttt |
105 |
Q |
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| T |
1154745 |
caaatctctccaatacttccatcacatatcttttttgactaatgaaaaatgccatcagtcttttgaattacttccaacgccaagaaagtacctaatcttt |
1154844 |
T |
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| Q |
106 |
cccaaatcagtcatatcaaactcaaccatcaagcattttttgaattcagcaaacattgactcatcattgtcagtaaatatcaaatcatcaacatacaaac |
205 |
Q |
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| T |
1154845 |
cccaaatcagtcatatcaaactcaaccatcaagcattttttgaattcagcaaacattgactcatcattgccagtaaatatcaaatcatcaacatacaaac |
1154944 |
T |
|
| Q |
206 |
ttacatttagaatcttacctccagcgcctgtcatgagaaacaaagtgtgttcacgcgagcatgtttcaaagccttcttttagaaaatacgattctatacg |
305 |
Q |
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| T |
1154945 |
ttacaattagaatcttacctccagcacctgtcatgagaaacaaagtgtgttcacgcgagcatgtttcaaagccttctttcagaaaatacgattctatacg |
1155044 |
T |
|
| Q |
306 |
aatgtaccatgctcgtggagcttgtttcagtccatacttggagcttgttcagtccatgaagtgtattcttcaacttatacaccttatgcccattgccgtt |
405 |
Q |
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| T |
1155045 |
aatgtaccatgctcgtggagcttgtttcagtcca----------------------tgaagtgtattcttcaacttatacaccttatgcccattgccgtt |
1155122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 125
Target Start/End: Complemental strand, 608995 - 608936
Alignment:
| Q |
66 |
attttgaattacttcaacgccaagaaagtacctaatctttcccaaatcagtcatatcaaa |
125 |
Q |
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| T |
608995 |
attttgagttacttccacaccaagaaagtacctcatttttcccaaatcagtcatagcaaa |
608936 |
T |
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