View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_low_4 (Length: 423)
Name: NF9767_low_4
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 23 - 407
Target Start/End: Complemental strand, 21493598 - 21493214
Alignment:
| Q |
23 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21493598 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
21493499 |
T |
|
| Q |
123 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttat--tatcacaatttccatgcatgca |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||||| |
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| T |
21493498 |
tcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatatcacaatttccatgcatgca |
21493399 |
T |
|
| Q |
221 |
tagataacgtatacgtagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
320 |
Q |
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| T |
21493398 |
tacataacg--tacatagaagaccaatcatgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcag |
21493301 |
T |
|
| Q |
321 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtgg |
407 |
Q |
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| T |
21493300 |
ataaaccaaccttaacattttctgggagaacagctttcaaatcaacagcatgagcaatagtagaaattggaccattgttgttagtgg |
21493214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 158 - 407
Target Start/End: Complemental strand, 21483309 - 21483062
Alignment:
| Q |
158 |
tcacaatctagtatggacttttgtttggc----cataatagttattatcacaatttccatgcatgcatagataacgtatacgtagaagaccaatcatgcc |
253 |
Q |
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| T |
21483309 |
tcacaatctagtatggtcttttgtttagctagccatactagttattatcacaatctccatgcatgcatacataacgta------gaagtccaatcatgcc |
21483216 |
T |
|
| Q |
254 |
aaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggagaacag |
353 |
Q |
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|||||||||||||||||||| |||||||||| |||| |||||||||| |||||||| || |||||||||||||||| |||| || | ||||||||||| |
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| T |
21483215 |
aaggtagaagtgaaagaccacgaatgaatgttttgcaattggcggccgccagatgtaactgttgcagataaaccaaccctaacgttctgtgggagaacag |
21483116 |
T |
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| Q |
354 |
ctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtgg |
407 |
Q |
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| T |
21483115 |
ctttcaaatcaacagcatgagcaacagttgaaatttgaccattgttgtcagtgg |
21483062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 158 - 407
Target Start/End: Complemental strand, 21489662 - 21489407
Alignment:
| Q |
158 |
tcacaatctagtatggacttttgtttggccataatagttattat----cacaatttccatgcatgcat----agataacgtatacgtagaagaccaatca |
249 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| |||||||||| |||||| ||||||||||||| | |||||||| ||||| |||||||||| |
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| T |
21489662 |
tcacaatctaatatggacttttgtttagccatactagttattatatatcacaatctccatgcatgcatgcatacataacgta--cgtaggagaccaatca |
21489565 |
T |
|
| Q |
250 |
tgccaaggtagaagtgaaagaccatgaatgaatgtgttgcgtttggcggccgttagatgtaattgatgcagataaaccaaccttaacattttctgggaga |
349 |
Q |
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||||||||| ||||||||||||||||||||||| |||||| |||||||||| || ||||| || | |||| ||||||||| |||| || ||||||| |
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| T |
21489564 |
tgccaaggttgaagtgaaagaccatgaatgaatctgttgcaattggcggccgacagctgtaactgttccagaaaaaccaaccctaacgttcggtgggaga |
21489465 |
T |
|
| Q |
350 |
acagctttcaaatcaacagcatgagcaatagtagaaattggagcattgttgttagtgg |
407 |
Q |
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|||||||||||||||||| ||| ||||| |||||||||| || ||||| ||||||||| |
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| T |
21489464 |
acagctttcaaatcaacaacatcagcaagagtagaaatttgaccattgctgttagtgg |
21489407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 21483509 - 21483432
Alignment:
| Q |
130 |
tttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
21483509 |
tttagacatactagttatcatcacaaattcacaatctagtatggacttttgtttagccatactagttattatcacaat |
21483432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 155
Target Start/End: Complemental strand, 21483640 - 21483520
Alignment:
| Q |
26 |
attcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatggtct |
125 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||| || | || |||||||||||| |
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| T |
21483640 |
attcatgacttggttatttaggtaacatta------ggttaagcatggactttatttatagaaaaaccgaaacatatacatgatt---caagtatggtct |
21483550 |
T |
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| Q |
126 |
tttctttagccatactagttatcatcacaa |
155 |
Q |
| |
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||| |||||||||||||||||| ||||||| |
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| T |
21483549 |
tttgtttagccatactagttattatcacaa |
21483520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 155
Target Start/End: Complemental strand, 21489897 - 21489775
Alignment:
| Q |
23 |
gagattcatgacttagttatttaggtaacattataattaggttaagcatggactttatttatagataaactgaaacatacacgtagttgttcaagtatgg |
122 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| | ||||||||||| |||||||||||||||| ||||||||| || | |||||||||||| |
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| T |
21489897 |
gagattcatgacttagctatttaggtaacatta------gtttaagcatgga-tttatttatagataaattgaaacatatac---atggttcaagtatgg |
21489808 |
T |
|
| Q |
123 |
tcttttctttagccatactagttatcatcacaa |
155 |
Q |
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||||| ||||||||||| |||||| ||||||| |
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| T |
21489807 |
tctttggtttagccataccagttattatcacaa |
21489775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 21483472 - 21483389
Alignment:
| Q |
116 |
agtatggtcttttctttagccatactagttatcatcacaaattcacaatctagtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
|
||||||| ||||| |||||||||||||||||| ||||||| |||| ||||||||||||||| |||||| |||||||||||||||| |
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| T |
21483472 |
agtatggacttttgtttagccatactagttattatcacaa--------tctaatatggacttttgtttagccatactagttattatcacaat |
21483389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 21483352 - 21483303
Alignment:
| Q |
158 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
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|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
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| T |
21483352 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 21483395 - 21483346
Alignment:
| Q |
158 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||| |||||||||||||||| |
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|
| T |
21483395 |
tcacaatctaatatggacttttgtttagccatactagttattatcacaat |
21483346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Complemental strand, 21489705 - 21489656
Alignment:
| Q |
158 |
tcacaatctagtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
|
|||||||||||||||| || |||||| | |||| |||||||||||||||| |
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|
| T |
21489705 |
tcacaatctagtatggtctattgtttaggcatactagttattatcacaat |
21489656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 207
Target Start/End: Complemental strand, 21483559 - 21483519
Alignment:
| Q |
167 |
agtatggacttttgtttggccataatagttattatcacaat |
207 |
Q |
| |
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||||||| ||||||||| |||||| |||||||||||||||| |
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| T |
21483559 |
agtatggtcttttgtttagccatactagttattatcacaat |
21483519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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