View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9767_low_5 (Length: 355)

Name: NF9767_low_5
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9767_low_5
NF9767_low_5
[»] chr7 (4 HSPs)
chr7 (43-337)||(24871394-24871688)
chr7 (44-124)||(34091546-34091626)
chr7 (241-305)||(12239467-12239531)
chr7 (241-305)||(37469085-37469149)
[»] chr3 (3 HSPs)
chr3 (44-126)||(40574386-40574468)
chr3 (44-88)||(31362353-31362397)
chr3 (126-170)||(33709919-33709963)
[»] chr8 (1 HSPs)
chr8 (44-126)||(12729353-12729435)
[»] chr2 (1 HSPs)
chr2 (44-103)||(14218981-14219040)
[»] chr6 (2 HSPs)
chr6 (234-305)||(28611993-28612064)
chr6 (195-305)||(24075652-24075764)
[»] chr5 (2 HSPs)
chr5 (45-103)||(9851538-9851596)
chr5 (47-104)||(26900465-26900522)
[»] scaffold0007 (1 HSPs)
scaffold0007 (44-103)||(217711-217770)
[»] chr4 (2 HSPs)
chr4 (225-303)||(20251601-20251680)
chr4 (245-291)||(46324642-46324688)
[»] chr1 (2 HSPs)
chr1 (45-126)||(42263502-42263583)
chr1 (44-117)||(52282095-52282168)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 43 - 337
Target Start/End: Original strand, 24871394 - 24871688
Alignment:
Q  43 tatcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagaggaattgacatgtgcaagtcacatca 142  Q
    ||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  24871394 tatcacattattgtgagtcaaaattctgccgaaaataatattaaatcattctctcttttcttaagtgcacgagaggaattgacatgtgcaagtcacatca 24871493  T
Q  143 aggattctatagtatcttaaaggagattcaccatatacccttttacatgtgattggtataactgatgggcacgaatcaaacataaatattaatgtgttac 242  Q
    |  |||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||| ||||  ||||||||||||    
T  24871494 aaaattctatactatcttgaaggagattcaccatatacccttttacatgtgattggcataactggcggggacgaatcaaacgtaaaggttaatgtgttac 24871593  T
Q  243 acacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaagtagattctaacatatcttgccactccacctact 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  24871594 acacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaagtaggtcctaacatatcttgccactccacctact 24871688  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 44 - 124
Target Start/End: Complemental strand, 34091626 - 34091546
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagaggaattga 124  Q
    ||||||||||| ||||||||||||| || |||||||||||||||| ||||  ||||||||  | |||| ||||| ||||||    
T  34091626 atcacattattatgagtcaaaattccgccgaaaataatattaaatcattcattcttttctctaatgcatgagagaaattga 34091546  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 12239531 - 12239467
Alignment:
Q  241 acacacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaagt 305  Q
    |||||| |||| |||||||| ||||| ||| ||| |||| ||| |||||||||||||||||||||    
T  12239531 acacacgctttgaaatttatgtgcacacttcatcatattcatcatcatcatcttcttaatcaagt 12239467  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 305
Target Start/End: Original strand, 37469085 - 37469149
Alignment:
Q  241 acacacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaagt 305  Q
    ||||||||||| |||||||| |||||  || ||| | || ||||||||||||||||| |||||||    
T  37469085 acacacactttgaaatttatgtgcacatttaatcatgttcatcttcatcatcttcttgatcaagt 37469149  T

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Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 44 - 126
Target Start/End: Complemental strand, 40574468 - 40574386
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagaggaattgaca 126  Q
    |||||||| ||||||||||||||||||| |||||||||||||||| ||||| ||||||||  |||||| ||||| ||||||||    
T  40574468 atcacattcttgtgagtcaaaattctgccgaaaataatattaaatcattctttcttttctctagtgcacgagagaaattgaca 40574386  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 88
Target Start/End: Complemental strand, 31362397 - 31362353
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaat 88  Q
    |||||||| ||||||||||||||||||  |||||||||| |||||    
T  31362397 atcacattcttgtgagtcaaaattctgtcgaaaataatactaaat 31362353  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 126 - 170
Target Start/End: Original strand, 33709919 - 33709963
Alignment:
Q  126 atgtgcaagtcacatcaaggattctatagtatcttaaaggagatt 170  Q
    ||||||||||||| ||||||||||||| ||||| |||||| ||||    
T  33709919 atgtgcaagtcacgtcaaggattctatcgtatcctaaaggggatt 33709963  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 12729353 - 12729435
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagaggaattgaca 126  Q
    |||||||| ||||| ||||||||||||| |||||| ||| ||||||||||| ||||||||  |||||| ||||| ||||||||    
T  12729353 atcacattgttgtgtgtcaaaattctgccgaaaattatactaaataattctttcttttctctagtgcacgagagaaattgaca 12729435  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 44 - 103
Target Start/End: Complemental strand, 14219040 - 14218981
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttct 103  Q
    |||||||||||||||||||||||| |||| ||||||||| ||||| ||||| ||||||||    
T  14219040 atcacattattgtgagtcaaaattatgctaaaaataatactaaatcattctttcttttct 14218981  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 234 - 305
Target Start/End: Complemental strand, 28612064 - 28611993
Alignment:
Q  234 atgtgttacacacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaagt 305  Q
    ||||||| ||||||||||||||||||| ||||| ||| ||| | || || |||||||||||||| |||||||    
T  28612064 atgtgttccacacactttaaaatttatgtgcacacttcatcatgttcatattcatcatcttcttgatcaagt 28611993  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 24075764 - 24075652
Alignment:
Q  195 ttggtataactgatgggcacgaatcaaacataaatattaatgtgttacacaca--ctttaaaatttatatgcactctttatcgtatttatcttcatcatc 292  Q
    ||||||||||||||||  || |||||||  ||||| ||| | |||| || |||  ||||  ||||||||||||| |||| || |||| ||||| ||||||    
T  24075764 ttggtataactgatggcgactaatcaaatctaaattttagtttgtttcatacatgctttggaatttatatgcacactttgtcatattcatctttatcatc 24075665  T
Q  293 ttcttaatcaagt 305  Q
    |||||||||||||    
T  24075664 ttcttaatcaagt 24075652  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 9851596 - 9851538
Alignment:
Q  45 tcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttct 103  Q
    |||||||||||||||||||||||||||  ||||||||| ||||| | ||| ||||||||    
T  9851596 tcacattattgtgagtcaaaattctgccaaaaataatactaaatcagtctttcttttct 9851538  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 26900465 - 26900522
Alignment:
Q  47 acattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttctt 104  Q
    ||||| ||||||||||||||| || ||||||||||| ||||| | ||| |||||||||    
T  26900465 acattcttgtgagtcaaaattttggtgaaaataatactaaattagtctttcttttctt 26900522  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 44 - 103
Target Start/End: Original strand, 217711 - 217770
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttct 103  Q
    |||||||| ||||| |||| |||||||| |||||||||  ||||||||||| ||||||||    
T  217711 atcacattgttgtgtgtcagaattctgccgaaaataattctaaataattctttcttttct 217770  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 20251601 - 20251680
Alignment:
Q  225 taaatattaatgtgt-tacacacactttaaaatttatatgcactctttatcgtatttatcttcatcatcttcttaatcaa 303  Q
    ||||||||| ||||| ||||||| |||| |||||||| || |||||| ||| | || |||||||||||||||||| ||||    
T  20251601 taaatattagtgtgtctacacacgctttgaaatttatgtgtactcttcatcatgttcatcttcatcatcttcttagtcaa 20251680  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 46324642 - 46324688
Alignment:
Q  245 acactttaaaatttatatgcactctttatcgtatttatcttcatcat 291  Q
    ||||||||||| |||| ||||||||| ||| ||||||||||||||||    
T  46324642 acactttaaaacttatgtgcactcttgatcatatttatcttcatcat 46324688  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 42263583 - 42263502
Alignment:
Q  45 tcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagaggaattgaca 126  Q
    ||||||| |||||||||||||| ||||  ||||||||| || || ||||| ||||||||  |||||| ||||| ||| ||||    
T  42263583 tcacattcttgtgagtcaaaatactgcctaaaataatactatatcattctttcttttctctagtgcacgagagaaatcgaca 42263502  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 117
Target Start/End: Complemental strand, 52282168 - 52282095
Alignment:
Q  44 atcacattattgtgagtcaaaattctgctgaaaataatattaaataattctctcttttcttaagtgcaggagag 117  Q
    |||||||| || |||||  |||||||  ||||||||||||||||| ||||| ||||||||  |||||| |||||    
T  52282168 atcacatttttatgagtttaaattctattgaaaataatattaaatcattctttcttttctctagtgcatgagag 52282095  T

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