View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_low_6 (Length: 349)
Name: NF9767_low_6
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 339
Target Start/End: Original strand, 7665951 - 7666272
Alignment:
| Q |
18 |
cattagccatcacagctttataagaagatccaaaccctccatttccaagaacttcagcagaagctttcatcaaatcaggtaaaccaaacacacccttctc |
117 |
Q |
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| T |
7665951 |
cattagccatcacagctttataagatgatccaaaccctccatttccaagaacttcagcagaagctttcatcaaatcaggtaaaccaaacacacccttctc |
7666050 |
T |
|
| Q |
118 |
attattcatcatcacaagctcaccaatgccttgactacacttagatgaacctcttttactacatgattttttcataaaattcgtatctcttttctcttga |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7666051 |
attattcatcatcacaagctcaccaatcccttgactacccttagatgaacctcttttactacatgattttttcataaaattcatatctcttttctcttga |
7666150 |
T |
|
| Q |
218 |
ttagtactactagtaatactattactactacttacttgaacttcaaaactaccactgtcattaatattttctctttcatatttcttaccaataatatcat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
7666151 |
ttagtactactagtaatactattactactacttacttgaacttcaaaactaccactgtcattaatattttctctttcatatttctcaccaataatatcat |
7666250 |
T |
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| Q |
318 |
caaatttaccctcctttttctt |
339 |
Q |
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||||||||||||||||||||| |
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| T |
7666251 |
taaatttaccctcctttttctt |
7666272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 141
Target Start/End: Complemental strand, 51845676 - 51845567
Alignment:
| Q |
32 |
gctttataagaagatccaaaccctccatttccaagaacttcagcagaagctttcatcaaatcaggtaaaccaaacacacccttctcattattcatcatca |
131 |
Q |
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|||||||||| ||| || || || |||||||| | ||| ||||||| |||||||||||||||||||| |||||||||||| || |||| ||||| ||| | |
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| T |
51845676 |
gctttataagcagaacctaatccaccatttcccaaaacctcagcagcagctttcatcaaatcaggtagaccaaacacacctttttcatcattcaccatta |
51845577 |
T |
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| Q |
132 |
caagctcacc |
141 |
Q |
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|||| ||||| |
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| T |
51845576 |
caagatcacc |
51845567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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