View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9767_low_9 (Length: 255)
Name: NF9767_low_9
Description: NF9767
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9767_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 16 - 253
Target Start/End: Original strand, 21975382 - 21975615
Alignment:
| Q |
16 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagct |
115 |
Q |
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| T |
21975382 |
acatcacacttgggataataggagaaggcatgcttacaccataattttgggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagct |
21975481 |
T |
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| Q |
116 |
cattcatctttgtctcccaagctttattcaggaaaag-aaaata-aaattaaaactcaactaacttatcattattatcattatgaatactaataagaata |
213 |
Q |
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|||||||||||| |||||||||||||||| ||| || |||||| ||||||||||||| | |||||||| | ||||||||||||||||| || | |
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| T |
21975482 |
cattcatctttgcatcccaagctttattcatgaatagaaaaatacaaattaaaactca------tcatcattatgaatattatgaatactaataataaca |
21975575 |
T |
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| Q |
214 |
ttatcaagataccttgggaatatgttgcctttgcttctcc |
253 |
Q |
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| T |
21975576 |
taatcaagataccttggaaatatgttgcctttgctgctcc |
21975615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 16 - 253
Target Start/End: Complemental strand, 44478796 - 44478563
Alignment:
| Q |
16 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagct |
115 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44478796 |
acatcacacttgggataataggagaaggcatgcttacaccataattttgggttgtgacctctcagccattcccatgcagcatgatcaaccttcttgagct |
44478697 |
T |
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| Q |
116 |
cattcatctttgtctcccaagctttattcaggaaaag-aaaata-aaattaaaactcaactaacttatcattattatcattatgaatactaataagaata |
213 |
Q |
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| T |
44478696 |
cattcatctttgcatcccaagctttattcatgaatagaaaaatacaaattaaaactca------tcatcattatgaatattatgaataccaataataaaa |
44478603 |
T |
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| Q |
214 |
ttatcaagataccttgggaatatgttgcctttgcttctcc |
253 |
Q |
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| T |
44478602 |
taatcaagataccttggaaatatgttgcctttgctgctcc |
44478563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 41770940 - 41770989
Alignment:
| Q |
16 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
65 |
Q |
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| T |
41770940 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
41770989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 47735782 - 47735733
Alignment:
| Q |
16 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
65 |
Q |
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||||||||||| ||||| || || || ||||||||||||||||||||||| |
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| T |
47735782 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
47735733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Original strand, 13649412 - 13649461
Alignment:
| Q |
16 |
acatcacacttgggatagtaggagaaggcatgcttacaccataatttagg |
65 |
Q |
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||||||||||| ||||| || || || ||||||||||||||||||||||| |
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| T |
13649412 |
acatcacacttaggataatatgaaaatgcatgcttacaccataatttagg |
13649461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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