View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9768_high_1 (Length: 807)
Name: NF9768_high_1
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 748; Significance: 0; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 748; E-Value: 0
Query Start/End: Original strand, 8 - 791
Target Start/End: Complemental strand, 9173380 - 9172597
Alignment:
| Q |
8 |
agcagcacagacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgtgcctatgtctgacacagatacgtgtcaggcacatgaa |
107 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
9173380 |
agcaacacggacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgcgcctatgtctggcacagatatgtgtcaggcacatgaa |
9173281 |
T |
|
| Q |
108 |
cggcaccctaaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173280 |
cggcaccctaaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtc |
9173181 |
T |
|
| Q |
208 |
tgacaccaatatgtgtcagacacccaacacaataatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaa |
307 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173180 |
taacaccaatatgtgtcagacacccaacacaataatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaa |
9173081 |
T |
|
| Q |
308 |
ctacgtgtgtttgtgtctaacaccattgtgtgtcaggggcacctgacacgccttcaatctagagtctagaagttattacataggtcacaataatcctcga |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9173080 |
ctacgtgtgtttgtgtctaacaccattgtgtgtcaggggcacctgacacgccttcaatctagagactagaagttattacataggtcacaataatcctcga |
9172981 |
T |
|
| Q |
408 |
gaacattaacaaaaataaaaccaaaacagattgtaaataccaattacctccaattttcttagcagcaggatcataactctcactgttcaaaaactcctta |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172980 |
caacattaacaaaaataaaaccaaaacagattgtaaataccaattacctccaattttcttagcagcaggatcataactctcactgttcaaaaactcctta |
9172881 |
T |
|
| Q |
508 |
acatcctccaaccctttcccataaacagcccacctaggattcctagcctctaccctctcatcactcaattcatctaattctctttccttctttttctcag |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172880 |
acatcctccaaccctttcccataaacagcccacctaggattcctagcctctaccctctcatcactcaattcatctaattctctttccttctttttctcag |
9172781 |
T |
|
| Q |
608 |
caaaacaaaaactcggaaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaa |
707 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172780 |
caaaacaaaaactcggaaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaa |
9172681 |
T |
|
| Q |
708 |
atgaaccaaccctcttttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttcttctttactatt |
791 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172680 |
atgaaccaacccacttttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttcttctttactatt |
9172597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 16 - 237
Target Start/End: Original strand, 8652900 - 8653119
Alignment:
| Q |
16 |
agacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgtgcctatgtctgacacagatacgtgtcaggcacatgaacggcaccc |
115 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |||||||| || |
|
|
| T |
8652900 |
agacacatataccggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgtgtcaggcaccggaacggcatcc |
8652999 |
T |
|
| Q |
116 |
taaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacacca |
215 |
Q |
| |
|
|| |||||||| ||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
8653000 |
tacacaataatctatgaagcagcaatacagatacatatactggatatgacactgacacatagataccaaaggtaactaca--tgtatgtgtctgacacca |
8653097 |
T |
|
| Q |
216 |
atatgtgtcagacacccaacac |
237 |
Q |
| |
|
||| |||||||||||| |||| |
|
|
| T |
8653098 |
atacatgtcagacacccgacac |
8653119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 305 - 571
Target Start/End: Original strand, 8653127 - 8653396
Alignment:
| Q |
305 |
taactacgtgtgtttgtgtctaacaccattgtgtgtcaggggcacctgacacgccttcaatctagagtctagaagttattacataggtcacaataatcct |
404 |
Q |
| |
|
||||||| |||||||||||||||||||||| |||||||| ||||||| ||| | |||||||||||| ||| ||||| |||||||||||| ||||||||| |
|
|
| T |
8653127 |
taactacatgtgtttgtgtctaacaccattacgtgtcaggcgcacctggcacacattcaatctagagactaaaagttgttacataggtcataataatcct |
8653226 |
T |
|
| Q |
405 |
cgagaacattaacaaaaataaaaccaaaacagattgtaaataccaattacctccaattttctt---agcagcaggatcataactctcactgttcaaaaac |
501 |
Q |
| |
|
| | | ||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| | ||||||||| |||||||||||||| ||||||||| |
|
|
| T |
8653227 |
caacagcatcaacagaaataaaaccaaaacagattgtaaataccaattacctccagttttcatagcagcagcagggtcataactctcactattcaaaaac |
8653326 |
T |
|
| Q |
502 |
tccttaacatcctccaaccctttcccataaacagcccacctaggattcctagcctctaccctctcatcac |
571 |
Q |
| |
|
|| ||||||||||| || ||| ||||||||||||||| ||||||||||||| | ||||||||||||||| |
|
|
| T |
8653327 |
tcattaacatcctcgaaacctcgcccataaacagcccatctaggattcctaggcactaccctctcatcac |
8653396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 624 - 781
Target Start/End: Original strand, 8653449 - 8653606
Alignment:
| Q |
624 |
aaccttatcaagaaccaaaggcgtcaactgagccaatttagcttctttataagctttatactcgttcgaatcaatatccctcaaatgaaccaaccctctt |
723 |
Q |
| |
|
||||||||||||||| |||||| ||| ||||||||||||||||||||||||||| |||||||| ||| |||| |||||||||||| ||| |||||||||| |
|
|
| T |
8653449 |
aaccttatcaagaactaaaggcttcatctgagccaatttagcttctttataagccttatactcattcaaatccatatccctcaaaggaatcaaccctctt |
8653548 |
T |
|
| Q |
724 |
ttcttcttcataaaattactattaaactcaaactcttgagctatcttacgccgttctt |
781 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
8653549 |
ttcttcttcataactttactattaaactcaatctcttgtgctatcttacgccgttctt |
8653606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 122 - 311
Target Start/End: Original strand, 8652878 - 8653078
Alignment:
| Q |
122 |
ataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacaccaatatgt |
221 |
Q |
| |
|
||||| ||||||||||||| | ||| | ||||||||||||||||||||||| |||| |||||| ||||||||||||| |||||||||||| |||| || |
|
|
| T |
8652878 |
ataatctatgaagcagcaacaaagacacatataccggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacacaaatacgt |
8652977 |
T |
|
| Q |
222 |
gtcagacac-----------ccaacacaataatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaacta |
310 |
Q |
| |
|
||||| ||| || ||||||||||||| ||||||||||||||| |||| | ||||| ||||| ||| ||||||||||||| ||||||| |
|
|
| T |
8652978 |
gtcaggcaccggaacggcatcctacacaataatctatgaagcagcaatacagatacatatactggatatgacactgacacatagataccaaaggtaacta |
8653077 |
T |
|
| Q |
311 |
c |
311 |
Q |
| |
|
| |
|
|
| T |
8653078 |
c |
8653078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 739 - 791
Target Start/End: Complemental strand, 9172604 - 9172552
Alignment:
| Q |
739 |
ttactattaaactcaaactcttgagctatcttacgccgttcttctttactatt |
791 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9172604 |
ttactattaaactcaaactcttgagctatcttacgccgttcttctttactatt |
9172552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 122 - 343
Target Start/End: Complemental strand, 9173394 - 9173162
Alignment:
| Q |
122 |
ataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaactacatgtgtatgtgtctgacaccaatatgt |
221 |
Q |
| |
|
||||| ||||||||||||| || || | |||||||||||||||| |||||| |||| |||||| ||||||||||| | | |||||| ||| |||||| |
|
|
| T |
9173394 |
ataatctatgaagcagcaacacggacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgcgcctatgtctggcacagatatgt |
9173295 |
T |
|
| Q |
222 |
gtca-----------gacacccaacacaataatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaacta |
310 |
Q |
| |
|
|||| | ||||| | |||||||| || ||||||||||||||| | | | |||||| ||||| ||| | ||||||||||| ||||||| |
|
|
| T |
9173294 |
gtcaggcacatgaacggcaccctaaacaataatatatgaagcagcaatacagataagtataccggatatgacactgacacgtagataccaaaggtaacta |
9173195 |
T |
|
| Q |
311 |
cgtgtgtttgtgtctaacaccattgtgtgtcag |
343 |
Q |
| |
|
| ||||| |||||||||||||| | |||||||| |
|
|
| T |
9173194 |
catgtgtatgtgtctaacaccaatatgtgtcag |
9173162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 70
Target Start/End: Original strand, 8653026 - 8653082
Alignment:
| Q |
14 |
acagacacatataccggatatgacattgacacatagaaaccaaacgtaactacatgt |
70 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
8653026 |
acagatacatatactggatatgacactgacacatagataccaaaggtaactacatgt |
8653082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 239 - 330
Target Start/End: Original strand, 8652878 - 8652969
Alignment:
| Q |
239 |
ataatctacaaagcagcaatacagaaacatgcatcggatacgacaccgacgcatagataccaaacgtaactacgtgtgtttgtgtctaacac |
330 |
Q |
| |
|
|||||||| ||||||||| | ||| |||| | |||||| ||||| ||| |||||| ||||||||||||||| |||| |||||||| |||| |
|
|
| T |
8652878 |
ataatctatgaagcagcaacaaagacacatataccggatatgacactgacacatagaaaccaaacgtaactacatgtgcttgtgtctgacac |
8652969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 739 - 781
Target Start/End: Complemental strand, 9172559 - 9172517
Alignment:
| Q |
739 |
ttactattaaactcaaactcttgagctatcttacgccgttctt |
781 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| || |||||| |
|
|
| T |
9172559 |
ttactattaaactcaatctcttgagctatcttaggctgttctt |
9172517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University