View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_high_11 (Length: 250)
Name: NF9768_high_11
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 14 - 245
Target Start/End: Original strand, 32118953 - 32119184
Alignment:
| Q |
14 |
agagtcaatatcattaaagctagaccagcgatgcctcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcgatacacaagcgga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| || |
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| T |
32118953 |
agagtcaatatcattaaagctagaccagcgatgcctcaaaaatcagaaaaatgacactaaggagagacaattatgcctaacttctcaatacacaagcaga |
32119052 |
T |
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| Q |
114 |
gtaaattttgattgatatatgataccggacttgaattacgtgtctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32119053 |
gtaaattttgattgatatatgataccggacttgaattacgtgtctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaat |
32119152 |
T |
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| Q |
214 |
ctgatcaaagacaacatatctaaatggagaca |
245 |
Q |
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|||||||||||||||||||||| | ||||||| |
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| T |
32119153 |
ctgatcaaagacaacatatctatacggagaca |
32119184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 14238318 - 14238523
Alignment:
| Q |
31 |
agctagaccagcgatgcctcaaaaa-tcagaaaaatgacactaaggagagacaattatgcctaacttctcgatacacaagcggagtaaattttgattgat |
129 |
Q |
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| T |
14238318 |
agctagaccagcaatgccttaaaaaatcagcaaaatgaaacaaaagagaaaaaattatgctcaacttctgattacacaagcagagtaaatatttattgat |
14238417 |
T |
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| Q |
130 |
atatgataccggacttgaattacgtgtctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaaca |
229 |
Q |
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| T |
14238418 |
atacgataccggacatgaattatgtacctggattcatgattccaggtggaatc-gatatcaagaatgccaaggaaaaggcaaatatgatggaagacaaca |
14238516 |
T |
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| Q |
230 |
tatctaa |
236 |
Q |
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||||||| |
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| T |
14238517 |
tatctaa |
14238523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 141 - 237
Target Start/End: Complemental strand, 14375709 - 14375614
Alignment:
| Q |
141 |
gacttgaattacgtgtctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaa |
237 |
Q |
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| T |
14375709 |
gacttgaattacgtacctggatttatgattccaggtggaatc-gatatcaagaatatcaaagaaaaggcaaatgtgatcaaagacaacatatctaaa |
14375614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 41436316 - 41436394
Alignment:
| Q |
157 |
ctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaa |
236 |
Q |
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| T |
41436316 |
ctggatttatgattccaggtggaatc-gatatcaagaatatcaaggaaaaggcaaatgtgatggaagacaacatatctaa |
41436394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 41449529 - 41449607
Alignment:
| Q |
157 |
ctggatttatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaa |
236 |
Q |
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| T |
41449529 |
ctggatttatgattccaggtggaatc-gatatcaagaatatcaaggaaaaggcaaacgtgatggaagacaacatatctaa |
41449607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 14376954 - 14376889
Alignment:
| Q |
31 |
agctagaccagcgatgcct-caaaaatcagaaaaatgacactaaggagagacaattatgcctaact |
95 |
Q |
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| T |
14376954 |
agctagaccagcaatgccttcaaaaatcagaaaaatgacacaaaggagaaataattatgcccaact |
14376889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 10593522 - 10593450
Alignment:
| Q |
164 |
tatgattccaggtggattctgatatcaagaatatcaaagaaaagacaaatctgatcaaagacaacatatctaaa |
237 |
Q |
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| T |
10593522 |
tatgattccaggtggaatc-gatatcaagaatatcaaagtaaaggaaaatgtgatcaaagacgacatgtctaaa |
10593450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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