View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_high_5 (Length: 405)
Name: NF9768_high_5
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 14175068 - 14175448
Alignment:
| Q |
15 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14175068 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
14175167 |
T |
|
| Q |
115 |
tggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcatgctact |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
14175168 |
tggggaagtggtgttgctttctgttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcacgctact |
14175267 |
T |
|
| Q |
215 |
tccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataacagcattgcagatattgttggaattggtgatgtgt |
314 |
Q |
| |
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||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
14175268 |
tccaataaagaattctttacaatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgttggaattggtgatgtgt |
14175367 |
T |
|
| Q |
315 |
gtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
395 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14175368 |
gtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
14175448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Complemental strand, 28610810 - 28610430
Alignment:
| Q |
15 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
114 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28610810 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
28610711 |
T |
|
| Q |
115 |
tggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcatgctact |
214 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
28610710 |
tggggaagtggtgttgctttctgttgaagaagaagaatgtcatcttgcagattcatgtgtttaatgggtcattgactcagcagcttcttatcacgctact |
28610611 |
T |
|
| Q |
215 |
tccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataacagcattgcagatattgttggaattggtgatgtgt |
314 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28610610 |
tccaataaagaattctttacgatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgttggaattggtgatgtgt |
28610511 |
T |
|
| Q |
315 |
gtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
395 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28610510 |
gtgttcaaaccaataccgattttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
28610430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 15 - 395
Target Start/End: Original strand, 12931798 - 12932178
Alignment:
| Q |
15 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12931798 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaagaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
12931897 |
T |
|
| Q |
115 |
tggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcatgctact |
214 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
12931898 |
tggggaagtggtgttgttttctgttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcacgctact |
12931997 |
T |
|
| Q |
215 |
tccaacaaagaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataacagcattgcagatattgttggaattggtgatgtgt |
314 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
12931998 |
tccaataaagaattctttacgatgtacaaagtaggagactttggcaaagtaaagatgggcaataatagcattgcagatattgttggaattggtgatgtgt |
12932097 |
T |
|
| Q |
315 |
gtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
395 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
12932098 |
gtgttcaaaccaataccggttttacactaacactgaagaacgtgcgacatgtgccagatttgcgtctaaatctaatctctg |
12932178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 15 - 393
Target Start/End: Complemental strand, 24874690 - 24874309
Alignment:
| Q |
15 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaaccccagtagttga |
114 |
Q |
| |
|
|||| ||||||||||| ||| ||||||| ||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||| ||||| ||| |
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|
| T |
24874690 |
acataaaaagaaattgaaaacaatggaagagcaaagaaaagaaggataagaggaatcaaatgccatacgaagatgaaaataccacaaccttagtaggtga |
24874591 |
T |
|
| Q |
115 |
tggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcatgctact |
214 |
Q |
| |
|
||||||| || ||||||||| |||||| |||||||||||| | ||| ||||||||||||| ||||||| ||||||| ||| ||||||||||||| ||| |
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|
| T |
24874590 |
tggggaaatgatgttgctttttgttgaaaaagaagaatgtcgtattgtagattcatgtgttatatgggtcgttgactctgcatcttcttatcatgccact |
24874491 |
T |
|
| Q |
215 |
tccaacaaagaattctttacgatgtataaagtaggagact---ttggcaaagtaaagatgggcaataacagcattgcagatattgttggaattggtgatg |
311 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||||||||| |||||||||| ||||| | ||| || | |||| |||||||||||||||| ||||| |
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|
| T |
24874490 |
tccaacaaagaattctttgtgatgtacaaagtaggagactttgttggcaaagtcaagatagacaacaataatattgtagatattgttggaattaatgatg |
24874391 |
T |
|
| Q |
312 |
tgtgtgttcaaaccaataccggttttacactaacactgaaggacgtgcgacatgtgccagatttgcgtctaaatctaatctc |
393 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||| ||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
24874390 |
tgtgtgttcaaaccaatatcggtttaacaccaacactaaaggacgtgcgacatgtgctagatttgcgtctaaatataatctc |
24874309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 15 - 329
Target Start/End: Complemental strand, 38996415 - 38996099
Alignment:
| Q |
15 |
acatcaaaagaaattgcaaatcttggaagaacaaagaaaagaaggaccggaggaatcaaagaccagacgaagatgaaaataccacaacccc-agtagttg |
113 |
Q |
| |
|
||||| |||||||||| |||||||||||||| ||| |||| |||||| ||||| |||| ||| | ||||||||||||||||||||||| | | || |
|
|
| T |
38996415 |
acatccaaagaaattgtaaatcttggaagaaaaaataaaataaggacaataggaaccaaatacctaaggaagatgaaaataccacaacccccaacactta |
38996316 |
T |
|
| Q |
114 |
atggggaagtggtgttgctttcagttgaagaagaagaatgtcatgttgcagattcatgtgttgaatgggtcattgactcagcagcttcttatcatgctac |
213 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||||||||| ||| |||||| ||||| |||||||||| | ||||||||| || ||||| |||||| || |
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|
| T |
38996315 |
atggggaagtggcgttgctttatgttgaagaagaagaatgccatattgcagtttcatttgttgaatggataattgactcaacatcttctaatcatgtcac |
38996216 |
T |
|
| Q |
214 |
ttccaacaaa-gaattctttacgatgtataaagtaggagactttggcaaagtaaagatgggcaataacagcattgcagatattgttggaattggtgatgt |
312 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||| ||||| |||| |||||| || |||||||||||||||||||||| |
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|
| T |
38996215 |
ttccaacaaaagaattctttacgatgtacaaagcaggagactttgacaaagtaaatatgggaaatagtagcattacaaatattgttggaattggtgatgt |
38996116 |
T |
|
| Q |
313 |
gtgtgttcaaaccaata |
329 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
38996115 |
gtgtgtttaaaccaata |
38996099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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