View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_high_6 (Length: 347)
Name: NF9768_high_6
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 91 - 334
Target Start/End: Original strand, 3295465 - 3295717
Alignment:
| Q |
91 |
tttgatcgtgaaaacatctatgtcaaaaa---------ataagaaaatcatatatgacaacaaaagttagaaatgaaatcatcatatagaatatcattta |
181 |
Q |
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| T |
3295465 |
tttgatcgtgaaaacatctatgtcaaaaaataagaaaaataagaaaatcatatatgacaacaaaagttagaaatgaaatcatcatatagaatatcattta |
3295564 |
T |
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| Q |
182 |
caaaatctaatagttgaaatagatttacaagttcattatactaaatctttgaacaactatatatcataagtcacaaggnnnnnnntaggagaccaattta |
281 |
Q |
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| T |
3295565 |
caaaatctaatagttgaaatagatttacaagttcattatactaaatctttgaacaactatatatcataagtcacaaggaaaaaaataggagaccaattta |
3295664 |
T |
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| Q |
282 |
aggaactcaattaattacatacgtttctagctagctctctcattgtttagccc |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3295665 |
aggaactcaattaattacatacgtttctagctagctctctcattgtttagccc |
3295717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 3295388 - 3295421
Alignment:
| Q |
17 |
agatttattgtgttttattattatgcttgtctat |
50 |
Q |
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| T |
3295388 |
agatttattgtgttttattattatgcttgtctat |
3295421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 161 - 212
Target Start/End: Original strand, 3289563 - 3289617
Alignment:
| Q |
161 |
catcatatagaatatca--tttacaaaatctaa-tagttgaaatagatttacaag |
212 |
Q |
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||||||||||||||||| |||||||||||||| ||||| ||||||||||||||| |
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| T |
3289563 |
catcatatagaatatcacttttacaaaatctaaatagttaaaatagatttacaag |
3289617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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