View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9768_low_11 (Length: 334)
Name: NF9768_low_11
Description: NF9768
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9768_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 14 - 319
Target Start/End: Complemental strand, 43623595 - 43623291
Alignment:
| Q |
14 |
aggccctttcttctctatgacccatgtcattaagtaatatccgacccctgtcacaataattccctaccaacacaaattaataatattttaatgcatagtg |
113 |
Q |
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| T |
43623595 |
aggccctttcttctctatgacccatgtcattaagtaatatccgacccctgtcacaataattccctaccaacaaaaattaataatattttaatgcatagtg |
43623496 |
T |
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| Q |
114 |
tataatactaaaagttgtataaccaaaattaaattagtagatgaaattgagaggattacacaataggctatagcgaggaggctgacgttccaacccaatt |
213 |
Q |
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| T |
43623495 |
tataatactaaaagttgtataaccaaa-ttaaattagtagatgaaactgagaggtttacacaataggctatagcgaggaggctgacgttccaacccaatt |
43623397 |
T |
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| Q |
214 |
tccactgctcaatgtccctttctatggccaaggcaatagctaaagattgaattgagcttaagaaacattggagagtcgtaaagctcaactttgaagggta |
313 |
Q |
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| T |
43623396 |
tccactgctcaatgtccctttctatggccaaggcaatagctaaagattgaattgagcttaagaaacattggagagtcgtaaagctcaactttgaagggta |
43623297 |
T |
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| Q |
314 |
gtcttt |
319 |
Q |
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|||||| |
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| T |
43623296 |
gtcttt |
43623291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 157 - 312
Target Start/End: Original strand, 42709218 - 42709373
Alignment:
| Q |
157 |
aaattgagaggattacacaataggctatagcgaggaggctgacgttccaacccaatttccactgctcaatgtccctttctatggccaaggcaatagctaa |
256 |
Q |
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| T |
42709218 |
aaattgagaggattacacaataggctatagcgaggaaggtgacgttccaacccaatttccagtgctgaatgtccctttctatggcgaaggcaacagctaa |
42709317 |
T |
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| Q |
257 |
agattgaattgagcttaagaaacattggagagtcgtaaagctcaactttgaagggt |
312 |
Q |
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| T |
42709318 |
agactgaattgagcttaataaacattggagagtcgtaaagattaactttgaagggt |
42709373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 91
Target Start/End: Original strand, 42709148 - 42709222
Alignment:
| Q |
18 |
cctttcttctctatgacccatgtcattaagtaatatccgacccctgtcacaat-aattccctaccaacacaaatt |
91 |
Q |
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|||||||||||||| |||||||||||||||||| | |||||||||| | || |||||||||||| |||||||| |
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| T |
42709148 |
cctttcttctctataacccatgtcattaagtaaagtgcgacccctgtggctataaattccctaccagcacaaatt |
42709222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 201 - 289
Target Start/End: Complemental strand, 38765838 - 38765750
Alignment:
| Q |
201 |
ttccaacccaatttccactgctcaatgtccctttctatggccaaggcaatagctaaagattgaattgagcttaagaaacattggagagt |
289 |
Q |
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| T |
38765838 |
ttccaacccaatttccattgttcaaagtctctttctacagccaacgctacgactaaagactgaattgagcttaagaaacattgaagagt |
38765750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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